Rice gene details
Searching for LOC_Os09g35790 [HSF-type DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g35790.1 455 37 268 PF00447.9 HSF_DNA-bind
2 LOC_Os09g35790.2 415 37 268 PF00447.9 HSF_DNA-bind
3 LOC_Os09g35790.3 104 37 103 PF00447.9 HSF_DNA-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  5
N22InfloresenceFC
  14
N22 Root FC
  5
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  9
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0042542 response to hydrogen peroxide  
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
9 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007338 cold water temperature regimen (+)
7 EO:0007368 warm/hot water temperature regimen (+)
8 EO:0007415 hydrogen peroxide (+)
9 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQAL006 deep root dry weight
4 AQF004 grain shattering
5 AQF040 seed dormancy
6 AQF071 anther length
7 AQF102 KClO3 resistance
8 AQFE116 tiller angle
9 CQAS108 panicle length
10 AQBK052 seed set percent
11 CQAS115 spikelet number
12 AQAI034 leaf area to spikelet number ratio
13 AQHR056 plant height
14 CQE75 space
15 CQE76 chlorophyll content
16 CQF12 soluble protein content
17 CQF13 rubisco content
18 AQGP021 spikelet number
19 AQGS010 panicle length
20 AQGS028 seed weight
21 AQGS031 grain yield per plant
22 CQAS117 yield
23 CQAW28 root number
24 AQFF014 total biomass yield
25 AQBK054 seed set percent
26 AQAA017 relative root length
27 AQCH001 tiller angle
28 CQAS113 seed set percent
29 CQAS114 1000-seed weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005052 plant callus (+)
3 PO:0006340 adult leaf (-)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009009 plant embryo (+)
8 PO:0009010 seed (-)
9 PO:0009046 flower (-)
10 PO:0009047 stem (+)
11 PO:0009049 inflorescence (+)
12 PO:0020104 leaf sheath (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Rerksiri Wirat; Zhang Xianwen; Xiong Hairong; Chen Xinbo; Expression and promoter analysis of six heat stress-inducible genes in rice. The Scientific World Journal 2013:2013
PMID [24459431]


Mittal Dheeraj; Madhyastha Dinesh A; Grover Anil; Gene expression analysis in response to low and high temperature and oxidative stresses in rice: Combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Science 2012:197
PMID [23116677]


Mittal Dheeraj; Chakrabarti Sveta; Sarkar Anshuk; Singh Amanjot; Grover Anil; Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiology and Biochemistry 2009:47
PMID [19539489]


Wang Chuang; Zhang Qian; Shou Hui-xia; Identification and expression analysis of OsHsfs in rice. Journal of Zhejiang University. Science. B 2009:10
PMID [19353748]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India