Rice gene details
Searching for LOC_Os09g36020 [EAP30/Vps36 family domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g36020.1 191 19 68 PF04157.8 EAP30
2 LOC_Os09g36020.1 191 90 162 PF04157.8 EAP30
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0048589 developmental growth  
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005768 endosome (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQF004 grain shattering
4 AQF040 seed dormancy
5 AQF071 anther length
6 AQF102 KClO3 resistance
7 AQFE116 tiller angle
8 CQAS108 panicle length
9 AQBK052 seed set percent
10 CQAS115 spikelet number
11 AQAI034 leaf area to spikelet number ratio
12 AQHR056 plant height
13 CQE75 space
14 CQE76 chlorophyll content
15 CQF12 soluble protein content
16 CQF13 rubisco content
17 AQGP021 spikelet number
18 AQGS010 panicle length
19 AQGS028 seed weight
20 AQGS031 grain yield per plant
21 CQAS117 yield
22 CQAW28 root number
23 AQFF014 total biomass yield
24 AQBK054 seed set percent
25 AQAA017 relative root length
26 AQCH001 tiller angle
27 CQAS113 seed set percent
28 CQAS114 1000-seed weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000543 coleoptile growth (+)
2 MCT:1000547 seminal root number (+)
3 TO:0000019 seedling height (+)
4 TO:0000104 floury endosperm (+)
5 TO:0000586 seminal root length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Zhang Xiang-Qian; Hou Pei; Zhu Hai-Tao; Li Guo-Dong; Liu Xin-Guo; Xie Xin-Ming; Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality. Molecular biology reports 2012:
PMID [23275199]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India