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Searching for LOC_Os09g36020
[EAP30/Vps36 family domain containing protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os09g36020.1 |
191 |
19 |
68 |
PF04157.8 |
EAP30 |
2 |
LOC_Os09g36020.1 |
191 |
90 |
162 |
PF04157.8 |
EAP30 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003674 |
molecular_function |
(RGAP) |
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Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009010 |
seed |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000543 |
coleoptile growth |
(+) |
2 |
MCT:1000547 |
seminal root number |
(+) |
3 |
TO:0000019 |
seedling height |
(+) |
4 |
TO:0000104 |
floury endosperm |
(+) |
5 |
TO:0000586 |
seminal root length |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhang Xiang-Qian; Hou Pei; Zhu Hai-Tao; Li Guo-Dong; Liu Xin-Guo; Xie Xin-Ming; Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality. Molecular biology reports 2012:
PMID [23275199]
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