Rice gene details
Searching for LOC_Os09g36680 [ribonuclease T2 family domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g36680.1 253 30 219 PF00445.10 Ribonuclease_T2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  20
N22InfloresenceFC
  154
N22 Root FC
 
IR64 Flag-leaf FC
  6
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004518 nuclease activity (RGAP)
2 GO:0003723 RNA binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0010114 response to red light  
6 GO:0010218 response to far red light  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0008152 metabolic process (RGAP)
9 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007203 far red light regimen (+)
4 EO:0007207 red light regimen (+)
5 EO:0007270 continuous dark (no light) regimen (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000285 recovery treatment from salt stress (+)
8 MCE:1000286 recovery treatment from drought stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQF004 grain shattering
4 AQF040 seed dormancy
5 AQF071 anther length
6 AQF102 KClO3 resistance
7 AQFE116 tiller angle
8 CQAS108 panicle length
9 AQBK052 seed set percent
10 CQAS115 spikelet number
11 AQAI034 leaf area to spikelet number ratio
12 AQHR056 plant height
13 CQE75 space
14 CQE76 chlorophyll content
15 CQF12 soluble protein content
16 CQF13 rubisco content
17 AQGP021 spikelet number
18 AQGS010 panicle length
19 AQGS028 seed weight
20 AQGS031 grain yield per plant
21 CQAS117 yield
22 CQAW28 root number
23 AQFF014 total biomass yield
24 AQBK054 seed set percent
25 AQAA017 relative root length
26 AQCH001 tiller angle
27 CQAS113 seed set percent
28 CQAS114 1000-seed weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0001008 C callose wall formation in pollen mother cells (-)
4 PO:0001009 D pollen mother cell meiosis stage (-)
5 PO:0007041 inflorescence emergence from flag leaf sheath (+)
6 PO:0007106 LP.03 three leaves visible (+)
7 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000314 first leaf from base (+)
2 MCP:1000316 third leaf from base (+)
3 MCP:1000362 fourth leaf from base (+)
4 MCP:1000527 etiolated shoot (+)
5 PO:0000001 embryo proper (+)
6 PO:0008037 seedling (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0020103 flag leaf (+)
12 PO:0025034 leaf (+)
13 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000551 recovery percentage (+)
2 TO:0000019 seedling height (+)
3 TO:0000085 leaf rolling (+)
4 TO:0000135 leaf length (+)
5 TO:0000586 seminal root length (+)
6 TO:0001007 coleoptile length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zheng Jun; Wang Yingying; He Yanan; Zhou Jinjun; Li Yaping; Liu Qianqian; Xie Xianzhi; Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice. Plant science : an international journal of experimental plant biology 2014:214
PMID [24268167]


Macintosh Gustavo C; Hillwig Melissa S; Meyer Alexander; Flagel Lex; RNase T2 genes from rice and the evolution of secretory ribonucleases in plants. Molecular Genetics and Genomics 2010:
PMID [20182746]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India