Rice gene details
Searching for LOC_Os09g36930 [aquaporin protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g36930.1 291 36 268 PF00230.12 MIP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -5
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006811 ion transport  
2 GO:0010036 response to boron-containing substance  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007540 boric acid (+)
2 MCE:1000069 dessication/dehydration stress (+)
3 MCE:1000300 boron deficiency treatment (+)
4 MCE:1000308 10B enriched boric acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQF004 grain shattering
4 AQF040 seed dormancy
5 AQF071 anther length
6 AQF102 KClO3 resistance
7 CQAS108 panicle length
8 AQBK052 seed set percent
9 CQAS115 spikelet number
10 CQE75 space
11 CQE76 chlorophyll content
12 CQF12 soluble protein content
13 CQF13 rubisco content
14 AQGS010 panicle length
15 AQGS028 seed weight
16 AQGS031 grain yield per plant
17 CQAS117 yield
18 CQAW28 root number
19 AQBK054 seed set percent
20 CQAS113 seed set percent
21 CQAS114 1000-seed weight
22 AQAF042 blast disease resistance
23 AQCY007 panicle number
24 AQGE018 cooked kernel elongation
25 AQGI004 root dry weight
26 AQGI021 root dry weight
27 AQGI028 root dry weight
28 AQHR024 tiller number
29 AQEE008 colored grain percentage
30 AQGP032 1000-seed weight
31 AQHF023 leaf senescence
32 AQHF042 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000343 primary root length (+)
2 MCT:1000549 shoot boron concentration (+)
3 MCT:1000550 root boron concentration (+)
4 MCT:2000012 yeast growth (+)
5 TO:0000571 shoot fresh weight (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Kundan; Mosa Kareem A; Chhikara Sudesh; Musante Craig; White Jason C; Dhankher Om Parkash; Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity. Planta 2014:239
PMID [24142111]


Ning Yuese; Jantasuriyarat Chachawan; Zhao Qingzhen; Zhang Huawei; Chen Songbiao; Liu Jinling; Liu Lijing; Tang Sanyuan; Park Chan Ho; Wang Xuejun; Liu Xionglun; Dai Liangying; Xie Qi; Wang Guo-Liang; The SINA E3 ligase OsDIS1 negatively regulates drought response in rice. Plant Physiology 2011:157
PMID [21719639]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India