Rice gene details
Searching for LOC_Os09g38980 [T-complex protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g38980.1 585 59 562 PF00118.16 Cpn60_TCP1
2 LOC_Os09g38980.2 358 1 335 PF00118.16 Cpn60_TCP1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  14
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0000003 reproduction (RGAP)
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0009790 embryo development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0005737 cytoplasm (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007174 cold temperature regimen (+)
3 EO:0007175 temperature environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE74 shoot elongation rate
2 AQF004 grain shattering
3 AQF040 seed dormancy
4 AQF071 anther length
5 AQF102 KClO3 resistance
6 CQF13 rubisco content
7 AQGS010 panicle length
8 AQGS028 seed weight
9 AQGS031 grain yield per plant
10 AQEE008 colored grain percentage
11 AQGP032 1000-seed weight
12 AQHF023 leaf senescence
13 AQHF042 leaf senescence
14 AQGM006 days to heading
15 AQGM024 spikelet fertility
16 AQGM036 grain yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007065 LP.05 five leaves visible (-)
4 PO:0007098 LP.02 two leaves visible (+)
5 PO:0007106 LP.03 three leaves visible (+)
6 PO:0007115 LP.04 four leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000100 upper leaf (+)
2 MCP:1000315 second leaf from base (+)
3 MCP:1000316 third leaf from base (+)
4 PO:0006339 juvenile leaf (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009047 stem (+)
8 PO:0009049 inflorescence (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000208 leaf whitening (+)
2 MCT:1000311 properly stacked thylakoid membranes (+)
3 MCT:1000524 chloroplast number (+)
4 MCT:1000548 chloroplast grana lamellae density (+)
5 TO:0000293 chlorophyll-a content (+)
6 TO:0000295 chlorophyll-b content (+)
7 TO:0000495 chlorophyll content (+)
8 TO:0000496 carotenoid content (+)
9 TO:0002715 chloroplast development trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jiang Quan; Mei Jie; Gong Xiao-Di; Xu Jian-Long; Zhang Jian-Hui; Teng Sheng; Lin Dong-Zhi; Dong Yan-Jun; Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388528]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India