Rice gene details
Searching for LOC_Os10g01570 [C-5 cytosine-specific DNA methylase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g01570.1 372 272 327 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  2
N22 Root FC
  -48
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
3 GO:0040029 regulation of gene expression, epigenetic (RGAP)
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
7 GO:0016043 cellular component organization (RGAP)
8 GO:0006464 protein modification process (RGAP)
9 GO:0000003 reproduction (RGAP)
10 GO:0009791 post-embryonic development (RGAP)
11 GO:0009790 embryo development (RGAP)
12 GO:0007049 cell cycle (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000016 polyethylene glycol (PEG) treatment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000166 5-10 days post-anthesis stage (+)
2 MCP:1000169 inflorescence 0.5-2mm stage (+)
3 MCP:1000170 inflorescence 2.1-5mm stage (+)
4 MCP:1000171 inflorescence 5.1-10mm stage (+)
5 MCP:1000172 inflorescence 0-3cm stage (+)
6 MCP:1000173 inflorescence 5-10cm stage (+)
7 MCP:1000174 inflorescence 10-15cm stage (+)
8 MCP:1000175 inflorescence 15-22cm stage (+)
9 MCP:1000176 inflorescence 22-30cm stage (+)
10 MCP:1000177 0-2 days post-anthesis stage (+)
11 MCP:1000180 11-20 days post-anthesis stage (+)
12 MCP:1000181 21-29 days post-anthesis stage (+)
13 MCP:1000212 3-4 days post-anthesis stage (+)
14 MCP:1000518 seedling development stage (+)
15 MCP:1000520 young inflorescence stage (+)
16 PO:0007014 booting (+)
17 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020104 leaf sheath (+)
12 PO:0020148 shoot apical meristem (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


2  Sharma Rita; Mohan Singh R K; Malik Garima; Deveshwar Priyanka; Tyagi Akhilesh K; Kapoor Sanjay; Kapoor Meenu; Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress. FEBS Journal 2009:276
PMID [19788421]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India