Rice gene details
Searching for LOC_Os10g02880 [O-methyltransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g02880.1 367 36 84 PF08100.3 Dimerisation
2 LOC_Os10g02880.1 367 90 343 PF00891.10 Methyltransf_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  27
N22InfloresenceFC
  -1
N22 Root FC
 
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  -2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm  
2 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007237 normal temperature regimen (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 MCE:1000324 chlorophyll a (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent
8 AQBI003 days to heading
9 AQBI006 pollen fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000526 etiolated leaf (+)
2 PO:0009005 root (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000581 N-acetylserotonin methyltransferase activity (+)
2 TO:0000599 enzyme activity trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Byeon Yeong; Lee Hyoung Yool; Lee Kyungjin; Park Sangkyu; Back Kyoungwhan; Cellular localization and kinetics of the rice melatonin biosynthetic enzymes SNAT and ASMT. Journal of pineal research 2014:56
PMID [24134674]


Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India