Rice gene details
Searching for LOC_Os10g07010 [3-ketoacyl-CoA synthase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g07010.1 615 120 411 PF08392.4 FAE1_CUT1_RppA
2 LOC_Os10g07010.1 615 433 475 PF02797.7 Chal_sti_synt_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -4
N22 Root FC
 
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0009987 cellular process (RGAP)
2 GO:0006629 lipid metabolic process (RGAP)
3 GO:0007275 multicellular organismal development (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005783 endoplasmic reticulum (RGAP)
3 GO:0005840 ribosome (RGAP)
4 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FASYN-ELONG-PWY fatty acid elongation -- saturated
2 PWY-282 epicuticular wax biosynthesis
3 PWY-5121 geranylgeranyldiphosphate biosynthesis II (plastidic)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent
8 AQBI003 days to heading
9 AQBI006 pollen fertility
10 AQED016 plant height
11 AQED024 panicle length
12 AQED069 seed set percent
13 AQEE004 groat percentage
14 AQEE009 colored grain percentage
15 AQEE012 milled rice ratio
16 AQBH002 male fertility restoration
17 AQBH004 male fertility restoration

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (+)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India