|
Searching for LOC_Os10g07010
[3-ketoacyl-CoA synthase, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os10g07010.1 |
615 |
120 |
411 |
PF08392.4 |
FAE1_CUT1_RppA |
2 |
LOC_Os10g07010.1 |
615 |
433 |
475 |
PF02797.7 |
Chal_sti_synt_C |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Biological process
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007024 |
aerobic environment |
(+) |
2 |
MCE:1000195 |
hypoxic environment |
(+) |
3 |
MCE:1000330 |
nitrogen flushing |
(+) |
|
Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
|
1 |
FASYN-ELONG-PWY |
fatty acid elongation -- saturated |
|
2 |
PWY-282 |
epicuticular wax biosynthesis |
|
3 |
PWY-5121 |
geranylgeranyldiphosphate biosynthesis II (plastidic) |
|
|
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000559 |
long adventitious root |
(+) |
2 |
MCP:1000560 |
short adventitious root |
(+) |
3 |
PO:0005427 |
sclerenchyma |
(+) |
4 |
PO:0005772 |
exodermis |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]
 |
|
|
|