Rice gene details
Searching for LOC_Os10g08014 [white-brown complex homolog protein 11, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g08014.1 507 208 419 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009651 response to salt stress  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0010555 response to mannitol stimulus  
7 GO:0006950 response to stress (RGAP)
8 GO:0006810 transport (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0009719 response to endogenous stimulus (RGAP)
11 GO:0009056 catabolic process (RGAP)
12 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
13 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBY004 root length
2 AQBK020 days to heading
3 AQBK027 plant height
4 AQBK053 seed set percent
5 AQBK043 seed number
6 AQBK051 seed set percent
7 AQBK055 seed set percent
8 AQBI003 days to heading
9 AQBI006 pollen fertility
10 AQED016 plant height
11 AQED024 panicle length
12 AQED069 seed set percent
13 AQEE004 groat percentage
14 AQEE009 colored grain percentage
15 AQEE012 milled rice ratio
16 AQBH002 male fertility restoration
17 AQBH004 male fertility restoration
18 AQCS003 ultraviolet-b resistance
19 AQCS006 ultraviolet-b resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India