Rice gene details
Searching for LOC_Os10g18820 [dirigent, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g18820.1 205 21 184 PF03018.6 Dirigent
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -4119
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0019748 secondary metabolic process (RGAP)
Cellular component
Not found
1 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK020 days to heading
2 AQBK027 plant height
3 AQBK053 seed set percent
4 AQBK043 seed number
5 AQBK051 seed set percent
6 AQBK055 seed set percent
7 AQBI003 days to heading
8 AQBI006 pollen fertility
9 AQED016 plant height
10 AQED024 panicle length
11 AQED069 seed set percent
12 AQEE004 groat percentage
13 AQEE009 colored grain percentage
14 AQEE012 milled rice ratio
15 AQBH002 male fertility restoration
16 AQBH004 male fertility restoration
17 AQCS003 ultraviolet-b resistance
18 AQCS006 ultraviolet-b resistance
19 AQFP017 culm strength
20 AQAP024 brown planthopper resistance
21 AQAP044 brown planthopper resistance
22 AQAP058 brown planthopper resistance
23 AQCU176 spikelet fertility
24 AQAM031 rhizome number
25 AQAM032 rhizome length
26 AQAM033 rhizome internode length
27 AQAM034 rhizome internode number
28 AQAM035 rhizome dry weight
29 AQDJ005 plant height
30 AQDJ014 internode length
31 AQDJ017 internode length
32 AQCI003 phosphorus sensitivity
33 AQEB004 1000-seed weight
34 AQEB008 1000-seed weight
35 AQEB013 1000-seed weight
36 AQFT028 root dry weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India