Rice gene details
Searching for LOC_Os10g21328 [DNA-directed RNA polymerase subunit alpha, putative ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g21328.1 338 23 231 PF01193.16 RNA_pol_L
2 LOC_Os10g21328.1 338 65 177 PF01000.18 RNA_pol_A_bac
3 LOC_Os10g21328.1 338 259 326 PF03118.7 RNA_pol_A_CTD
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005622 intracellular (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK020 days to heading
2 AQBK027 plant height
3 AQBK053 seed set percent
4 AQBK043 seed number
5 AQBK051 seed set percent
6 AQBK055 seed set percent
7 AQBI003 days to heading
8 AQBI006 pollen fertility
9 AQBH002 male fertility restoration
10 AQBH004 male fertility restoration
11 AQCS003 ultraviolet-b resistance
12 AQCS006 ultraviolet-b resistance
13 AQAP024 brown planthopper resistance
14 AQAP044 brown planthopper resistance
15 AQAP058 brown planthopper resistance
16 AQCU176 spikelet fertility
17 AQAM031 rhizome number
18 AQAM032 rhizome length
19 AQAM033 rhizome internode length
20 AQAM034 rhizome internode number
21 AQAM035 rhizome dry weight
22 AQDJ005 plant height
23 AQDJ014 internode length
24 AQDJ017 internode length
25 AQCI003 phosphorus sensitivity
26 AQEB004 1000-seed weight
27 AQEB008 1000-seed weight
28 AQEB013 1000-seed weight
29 AQFT028 root dry weight
30 AQAJ002 male fertility restoration
31 AQFJ069 grain yield per plant
32 AQGP005 days to heading
33 CQAE13 spikelet fertility
34 AQBM004 callus induction
35 AQBM011 green plantlet yield frequency
36 CQB31 days to heading
37 CQZ19 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India