Rice gene details
Searching for LOC_Os10g22310 [glutathione S-transferase GST 26, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g22310.1 219 2 37 PF02798.12 GST_N
2 LOC_Os10g22310.1 219 83 182 PF00043.17 GST_C
3 LOC_Os10g22310.3 115 2 37 PF02798.12 GST_N
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  1
N22 Root FC
  -31
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
3 GO:0008152 metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0009056 catabolic process (RGAP)
6 GO:0019748 secondary metabolic process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009719 response to endogenous stimulus (RGAP)
9 GO:0009791 post-embryonic development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007080 jasmonic acid regimen (+)
2 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
3 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK020 days to heading
2 AQBK027 plant height
3 AQBK053 seed set percent
4 AQBK043 seed number
5 AQBK051 seed set percent
6 AQBK055 seed set percent
7 AQBI003 days to heading
8 AQBI006 pollen fertility
9 AQBH002 male fertility restoration
10 AQBH004 male fertility restoration
11 AQCS003 ultraviolet-b resistance
12 AQCS006 ultraviolet-b resistance
13 AQAP024 brown planthopper resistance
14 AQAP044 brown planthopper resistance
15 AQAP058 brown planthopper resistance
16 AQCU176 spikelet fertility
17 AQAM031 rhizome number
18 AQAM032 rhizome length
19 AQAM033 rhizome internode length
20 AQAM034 rhizome internode number
21 AQAM035 rhizome dry weight
22 AQDJ005 plant height
23 AQDJ014 internode length
24 AQDJ017 internode length
25 AQCI003 phosphorus sensitivity
26 AQEB004 1000-seed weight
27 AQEB008 1000-seed weight
28 AQEB013 1000-seed weight
29 AQFT028 root dry weight
30 AQAJ002 male fertility restoration
31 AQFJ069 grain yield per plant
32 AQGP005 days to heading
33 CQAE13 spikelet fertility
34 AQBM004 callus induction
35 AQBM011 green plantlet yield frequency
36 CQB31 days to heading
37 CQZ19 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000647 glutathione-S-transferase activity assay (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Yoshii Motoyasu; Yamazaki Muneo; Rakwal Randeep; Kishi-Kaboshi Mitsuko; Miyao Akio; Hirochika Hirohiko; The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling. The Plant Journal 2010:61
PMID [20015061]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India