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Searching for LOC_Os10g28240
[calcium-transporting ATPase, plasma membrane-type, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os10g28240.1 |
1036 |
135 |
186 |
PF00690.18 |
Cation_ATPase_N |
2 |
LOC_Os10g28240.1 |
1036 |
201 |
450 |
PF00122.12 |
E1-E2_ATPase |
3 |
LOC_Os10g28240.1 |
1036 |
454 |
782 |
PF00702.18 |
Hydrolase |
4 |
LOC_Os10g28240.1 |
1036 |
843 |
1014 |
PF00689.13 |
Cation_ATPase_C |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
EO:0007173 |
warm/hot temperature regimen |
(+) |
4 |
EO:0007198 |
water environment |
(+) |
5 |
EO:0007332 |
cold air temperature regimen |
(+) |
6 |
MCE:1000069 |
dessication/dehydration stress |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009005 |
root |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Kamrul Huda Kazi Md; Yadav Sandep; Akhter Banu Mst Sufara; Trivedi Dipesh Kumar; Tuteja Narendra; Genome-wide analysis of plant-type II Ca(2+)ATPases gene family from rice and Arabidopsis: Potential role in abiotic stresses. Plant Physiology and Biochemistry 2013: 65C
PMID [23416494]
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2 |
Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]
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3 |
Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]
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