Rice gene details
Searching for LOC_Os10g28240 [calcium-transporting ATPase, plasma membrane-type, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g28240.1 1036 135 186 PF00690.18 Cation_ATPase_N
2 LOC_Os10g28240.1 1036 201 450 PF00122.12 E1-E2_ATPase
3 LOC_Os10g28240.1 1036 454 782 PF00702.18 Hydrolase
4 LOC_Os10g28240.1 1036 843 1014 PF00689.13 Cation_ATPase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  -6
N22 Root FC
  -6
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  21
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009408 response to heat  
3 GO:0009409 response to cold  
4 GO:0009414 response to water deprivation  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0008152 metabolic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
11 GO:0009058 biosynthetic process (RGAP)
12 GO:0009056 catabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAP024 brown planthopper resistance
7 AQAP044 brown planthopper resistance
8 AQAP058 brown planthopper resistance
9 AQCU176 spikelet fertility
10 AQAM031 rhizome number
11 AQAM032 rhizome length
12 AQAM033 rhizome internode length
13 AQAM034 rhizome internode number
14 AQAM035 rhizome dry weight
15 AQFJ069 grain yield per plant
16 AQGP005 days to heading
17 CQAE13 spikelet fertility
18 CQAS125 seed number
19 AQJ010 seed weight
20 AQEJ046 leaf area
21 AQEJ048 leaf width
22 AQEJ050 leaf area
23 AQEJ052 leaf width
24 AQEJ054 leaf area
25 AQEJ082 root activity
26 CQAS123 spikelet number
27 CQAS124 spikelet density
28 CQA28 days to heading
29 CQA29 vegetative growth time
30 CQA30 reproductive growth time
31 CQAS128 spikelet number
32 AQGC016 root penetration index
33 AQGC034 penetrated root thickness
34 CQAS118 plant height
35 CQAS121 panicle length
36 CQAS122 panicle number
37 AQF052 awn length
38 AQF072 anther length
39 AQF103 KClO3 resistance
40 AQF150 seed width
41 CQG8 leaf rolling time
42 AQCO014 spikelet fertility
43 AQCP014 spikelet fertility
44 CQB32 plant height
45 AQAB052 spikelet number
46 AQAC041 reducing sugar content
47 AQAG037 1000-seed weight
48 AQAG050 1000-seed weight
49 AQEX012 root length
50 AQGI216 total biomass yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kamrul Huda Kazi Md; Yadav Sandep; Akhter Banu Mst Sufara; Trivedi Dipesh Kumar; Tuteja Narendra; Genome-wide analysis of plant-type II Ca(2+)ATPases gene family from rice and Arabidopsis: Potential role in abiotic stresses. Plant Physiology and Biochemistry 2013: 65C
PMID [23416494]


Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India