|
Searching for LOC_Os10g32600
[MYB family transcription factor, putative ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os10g32600.1 |
257 |
112 |
162 |
PF00249.23 |
Myb_DNA-binding |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Not found |
1 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
2 |
GO:0004871 |
signal transducer activity |
(RGAP) |
|
Biological process
Not found |
1 |
GO:0009058 |
biosynthetic process |
(RGAP) |
2 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
3 |
GO:0007275 |
multicellular organismal development |
(RGAP) |
4 |
GO:0009987 |
cellular process |
(RGAP) |
5 |
GO:0019748 |
secondary metabolic process |
(RGAP) |
6 |
GO:0007165 |
signal transduction |
(RGAP) |
7 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
|
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007200 |
short day length regimen |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000521 |
mature plant stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0020039 |
leaf lamina |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Li Riqing; Xia Jixing; Xu Yiwei; Zhao Xiucai; Liu Yao-Guang; Chen Yuanling; Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2014:127
PMID [24158250]
 |
|
|
2 |
Kim Soon-Kap; Yun Choong-Hyo; Lee Jeong Hwan; Jang Yun Hee; Park Hyo-Young; Kim Jeong-Kook; OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice. Planta 2008:228
PMID [18449564]
 |
|
|
|