Rice gene details
Searching for LOC_Os10g32600 [MYB family transcription factor, putative ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g32600.1 257 112 162 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
2 GO:0004871 signal transducer activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0007275 multicellular organismal development (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0019748 secondary metabolic process (RGAP)
6 GO:0007165 signal transduction (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007200 short day length regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 CQAE13 spikelet fertility
12 AQEJ046 leaf area
13 AQEJ048 leaf width
14 AQEJ050 leaf area
15 AQEJ052 leaf width
16 AQEJ054 leaf area
17 AQEJ082 root activity
18 CQAS123 spikelet number
19 CQAS124 spikelet density
20 AQGC016 root penetration index
21 AQGC034 penetrated root thickness
22 CQAS118 plant height
23 CQAS121 panicle length
24 CQAS122 panicle number
25 AQF052 awn length
26 AQF072 anther length
27 AQF103 KClO3 resistance
28 AQF150 seed width
29 CQG8 leaf rolling time
30 CQB32 plant height
31 CQAS119 days to heading
32 CQAS120 days to maturity
33 CQAS126 seed set percent
34 CQAS129 seed number
35 AQEI016 leaf senescence
36 AQEI147 leaf senescence
37 AQFU012 rice bran percentage
38 AQAB025 large vascular bundle number
39 AQAB037 panicle length
40 AQAB063 large vascular bundle number
41 AQAC027 root dry weight
42 AQAI024 large vascular bundle number
43 AQCQ008 panicle number
44 CQE77 culm thickness
45 CQK13 panicle number
46 AQEO013 seed length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Li Riqing; Xia Jixing; Xu Yiwei; Zhao Xiucai; Liu Yao-Guang; Chen Yuanling; Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2014:127
PMID [24158250]


2  Kim Soon-Kap; Yun Choong-Hyo; Lee Jeong Hwan; Jang Yun Hee; Park Hyo-Young; Kim Jeong-Kook; OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice. Planta 2008:228
PMID [18449564]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India