Rice gene details
Searching for LOC_Os10g32980 [CESA7 - cellulose synthase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g32980.1 1064 197 1058 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -4
N22 Root FC
  2
IR64 Flag-leaf FC
  37
IR64InfloresenceFC
  2
IR64 Root FC
  5

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009607 response to biotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0005975 carbohydrate metabolic process (RGAP)
6 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1001 cellulose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 CQAE13 spikelet fertility
12 AQEJ046 leaf area
13 AQEJ048 leaf width
14 AQEJ050 leaf area
15 AQEJ052 leaf width
16 AQEJ054 leaf area
17 AQEJ082 root activity
18 CQAS123 spikelet number
19 CQAS124 spikelet density
20 AQGC016 root penetration index
21 AQGC034 penetrated root thickness
22 CQAS118 plant height
23 CQAS121 panicle length
24 CQAS122 panicle number
25 AQF052 awn length
26 AQF072 anther length
27 AQF103 KClO3 resistance
28 AQF150 seed width
29 CQB32 plant height
30 CQAS119 days to heading
31 CQAS120 days to maturity
32 CQAS126 seed set percent
33 CQAS129 seed number
34 AQEI016 leaf senescence
35 AQEI147 leaf senescence
36 AQFU012 rice bran percentage
37 AQAB025 large vascular bundle number
38 AQAB037 panicle length
39 AQAB063 large vascular bundle number
40 AQAC027 root dry weight
41 AQAI024 large vascular bundle number
42 AQCQ008 panicle number
43 CQE77 culm thickness
44 CQK13 panicle number
45 AQEO013 seed length
46 CQA31 days to heading
47 CQA32 vegetative growth time
48 CQA33 reproductive growth time

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (-)
3 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000595 second stem internode (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000375 cellulose content (+)
2 MCT:1000533 cell wall thickness (+)
3 TO:0000207 plant height (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Suikang; Xu Yanxia; Li Zhilan; Zhang Saina; Lim Jae-Min; Lee Kyun Oh; Li Chuanyou; Qian Qian; Jiang Dean; Qi Yanhua; OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:
PMID [24597623]


Yang Chunhua; Li Dayong; Liu Xue; Ji Chengjun; Hao Lili; Zhao Xianfeng; Li Xiaobing; Chen Caiyan; Cheng Zhukuan; Zhu Lihuang; OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [24906444]


Dai Xiaoxia; You Changjun; Chen Guoxing; Li Xianghua; Zhang Qifa; Wu Changyin; OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice. Plant Molecular Biology 2011:75
PMID [21264494]


Tanaka Katsuyuki; Murata Kazumasa; Yamazaki Muneo; Onosato Katsura; Miyao Akio; Hirochika Hirohiko; Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant physiology 2003:133
PMID [12970476]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India