Rice gene details
Searching for LOC_Os10g35370 [oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g35370.1 403 86 173 PF00106.17 adh_short
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  6
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009719 response to endogenous stimulus (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007175 temperature environment (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000351 5-aminolevulinic acid (+)
4 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLUCONEO-PWY gluconeogenesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 CQAS123 spikelet number
12 CQAS124 spikelet density
13 AQGC016 root penetration index
14 AQGC034 penetrated root thickness
15 CQAS118 plant height
16 CQAS121 panicle length
17 CQAS122 panicle number
18 AQF052 awn length
19 AQF072 anther length
20 AQF103 KClO3 resistance
21 AQF150 seed width
22 CQAS119 days to heading
23 CQAS120 days to maturity
24 CQAS126 seed set percent
25 CQAS129 seed number
26 AQFU012 rice bran percentage
27 AQCQ008 panicle number
28 CQE77 culm thickness
29 CQA31 days to heading
30 CQA32 vegetative growth time
31 CQA33 reproductive growth time
32 AQDY124 culm length
33 AQDY126 panicle length
34 AQDY127 panicle length
35 AQDY130 panicle number
36 AQDY131 panicle number
37 AQDY132 panicle number
38 AQDY133 panicle number
39 AQDY137 tiller number
40 AQAP046 brown planthopper resistance
41 AQCU037 panicle length
42 AQDR008 1000-seed weight
43 AQDR015 grain number
44 AQFE065 seed set percent
45 AQFE066 seed set percent
46 AQAJ003 male fertility restoration
47 AQAK023 spikelet fertility
48 AQAB003 panicle length
49 AQAI014 leaf area
50 AQGM012 panicle length
51 AQBH003 male fertility restoration
52 AQBH001 male fertility restoration
53 AQDY135 panicle number
54 AQU008 plant survival percentage under submergence
55 CQX24 internode length
56 AQEI037 leaf senescence
57 AQGI246 total biomass yield
58 AQHR057 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000230 third leaf from top (+)
2 MCP:1000406 second leaf from top (+)
3 MCP:1000412 first leaf from top (+)
4 MCP:1000499 fourth leaf from top (+)
5 MCP:1000500 fifth leaf from top (+)
6 PO:0000003 whole plant (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009047 stem (+)
9 PO:0020039 leaf lamina (+)
10 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000069 variegated leaf (+)
2 TO:0000298 chlorophyll ratio (+)
3 TO:0000495 chlorophyll content (+)
4 TO:0000496 carotenoid content (+)
5 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Sakuraba Yasuhito; Rahman Md Lutfor; Cho Sung-Hwan; Kim Ye-Sol; Koh Hee-Jong; Yoo Soo-Cheul; Paek Nam-Chon; The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions. The Plant journal 2013:
PMID [23289852]


Yang Qiaosong; He Han; Li Heying; Tian Hua; Zhang Jianjun; Zhai Liguang; Chen Jiandong; Wu Hong; Yi Ganjun; He Zheng-Hui; Peng Xinxiang; NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and Rubisco formation in rice. Plos One 2011:6
PMID [21625436]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India