Rice gene details
Searching for LOC_Os10g35840 [shikimate/quinate 5-dehydrogenase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g35840.1 538 91 242 PF05201.7 GlutR_N
2 LOC_Os10g35840.1 538 246 398 PF01488.12 Shikimate_DH
3 LOC_Os10g35840.1 538 411 518 PF00745.12 GlutR_dimer
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -5
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)
2 MCE:1000351 5-aminolevulinic acid (+)
3 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5188 tetrapyrrole biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 AQF052 awn length
12 AQF072 anther length
13 AQF103 KClO3 resistance
14 AQF150 seed width
15 CQAS119 days to heading
16 CQAS120 days to maturity
17 CQAS126 seed set percent
18 CQAS129 seed number
19 AQCQ008 panicle number
20 CQE77 culm thickness
21 CQA31 days to heading
22 CQA32 vegetative growth time
23 CQA33 reproductive growth time
24 AQDY124 culm length
25 AQDY126 panicle length
26 AQDY127 panicle length
27 AQDY130 panicle number
28 AQDY131 panicle number
29 AQDY132 panicle number
30 AQDY133 panicle number
31 AQDY137 tiller number
32 AQAP046 brown planthopper resistance
33 AQCU037 panicle length
34 AQDR008 1000-seed weight
35 AQDR015 grain number
36 AQFE065 seed set percent
37 AQFE066 seed set percent
38 AQAJ003 male fertility restoration
39 AQAK023 spikelet fertility
40 AQAB003 panicle length
41 AQAI014 leaf area
42 AQGM012 panicle length
43 AQDY135 panicle number
44 AQU008 plant survival percentage under submergence
45 CQX24 internode length
46 AQEI037 leaf senescence
47 AQGI246 total biomass yield
48 AQHR057 plant height
49 AQFA012 grain width
50 AQCF013 1000-seed weight
51 AQCF024 1000-seed weight
52 AQCF045 1000-seed weight
53 AQCG003 male fertility restoration

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


2  Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India