Rice gene details
Searching for LOC_Os10g36703 [CPuORF40 - conserved peptide uORF-containing transcript, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g36703.1 126 23 88 PF02519.6 Auxin_inducible
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  1
N22 Root FC
  -17
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  5
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK043 seed number
2 AQBK051 seed set percent
3 AQBK055 seed set percent
4 AQBI003 days to heading
5 AQBI006 pollen fertility
6 AQAM031 rhizome number
7 AQAM032 rhizome length
8 AQAM033 rhizome internode length
9 AQAM034 rhizome internode number
10 AQAM035 rhizome dry weight
11 AQF052 awn length
12 AQF072 anther length
13 AQF103 KClO3 resistance
14 AQF150 seed width
15 CQE77 culm thickness
16 CQA31 days to heading
17 CQA32 vegetative growth time
18 CQA33 reproductive growth time
19 AQDY124 culm length
20 AQDY126 panicle length
21 AQDY127 panicle length
22 AQDY130 panicle number
23 AQDY131 panicle number
24 AQDY132 panicle number
25 AQDY133 panicle number
26 AQDY137 tiller number
27 AQAP046 brown planthopper resistance
28 AQCU037 panicle length
29 AQDR008 1000-seed weight
30 AQDR015 grain number
31 AQFE065 seed set percent
32 AQFE066 seed set percent
33 AQAB003 panicle length
34 AQAI014 leaf area
35 AQGM012 panicle length
36 AQDY135 panicle number
37 AQU008 plant survival percentage under submergence
38 CQX24 internode length
39 AQEI037 leaf senescence
40 AQGI246 total biomass yield
41 AQHR057 plant height
42 AQFA012 grain width
43 AQCF013 1000-seed weight
44 AQCF024 1000-seed weight
45 AQCF045 1000-seed weight
46 AQCG003 male fertility restoration

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India