Rice gene details
Searching for LOC_Os10g38229 [photosystem I P700 chlorophyll a apoprotein A1, putative ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g38229.1 751 32 744 PF00223.11 PsaA_PsaB
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -3
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
Biological process
Not found
1 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK051 seed set percent
2 AQBK055 seed set percent
3 AQBI003 days to heading
4 AQBI006 pollen fertility
5 AQAM031 rhizome number
6 AQAM032 rhizome length
7 AQAM033 rhizome internode length
8 AQAM034 rhizome internode number
9 AQAM035 rhizome dry weight
10 AQF052 awn length
11 AQF072 anther length
12 AQF103 KClO3 resistance
13 AQF150 seed width
14 CQE77 culm thickness
15 CQA31 days to heading
16 CQA32 vegetative growth time
17 CQA33 reproductive growth time
18 AQDY126 panicle length
19 AQDY127 panicle length
20 AQDY130 panicle number
21 AQDY131 panicle number
22 AQDY132 panicle number
23 AQDY133 panicle number
24 AQDY137 tiller number
25 AQFE065 seed set percent
26 AQFE066 seed set percent
27 AQAB003 panicle length
28 AQAI014 leaf area
29 AQGM012 panicle length
30 AQDY135 panicle number
31 AQU008 plant survival percentage under submergence
32 CQX24 internode length
33 AQEI037 leaf senescence
34 AQGI246 total biomass yield
35 AQHR057 plant height
36 AQFA012 grain width
37 AQCF013 1000-seed weight
38 AQCF024 1000-seed weight
39 AQCF045 1000-seed weight
40 AQCG003 male fertility restoration
41 AQS011 days to heading
42 CQB33 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India