Rice gene details
Searching for LOC_Os10g40100 [protein kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g40100.1 900 535 736 PF00069.17 Pkinase
2 LOC_Os10g40100.1 900 824 896 PF04564.7 U-box
3 LOC_Os10g40100.2 808 443 644 PF00069.17 Pkinase
4 LOC_Os10g40100.2 808 732 804 PF04564.7 U-box
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -3
N22 Root FC
  -1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009611 response to wounding  
2 GO:0009617 response to bacterium  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0009751 response to salicylic acid stimulus  
5 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
6 GO:0042742 defense response to bacterium  
7 GO:0008152 metabolic process (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0006950 response to stress (RGAP)
10 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007198 water environment (+)
4 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
5 MCE:1000090 ethanol (+)
6 MCE:1000302 Xanthomonas oryzae pv. oryzicola strain RS105 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK051 seed set percent
2 AQBK055 seed set percent
3 AQBI003 days to heading
4 AQBI006 pollen fertility
5 AQAM031 rhizome number
6 AQAM032 rhizome length
7 AQAM033 rhizome internode length
8 AQAM034 rhizome internode number
9 AQAM035 rhizome dry weight
10 AQF052 awn length
11 AQF072 anther length
12 AQF103 KClO3 resistance
13 AQF150 seed width
14 AQFE065 seed set percent
15 AQFE066 seed set percent
16 AQAB003 panicle length
17 AQAI014 leaf area
18 AQGM012 panicle length
19 AQU008 plant survival percentage under submergence
20 CQX24 internode length
21 AQGI246 total biomass yield
22 AQHR057 plant height
23 AQFA012 grain width
24 AQCF013 1000-seed weight
25 AQCF024 1000-seed weight
26 AQCF045 1000-seed weight
27 AQCG003 male fertility restoration
28 AQEI074 leaf senescence
29 AQFW078 days to heading
30 AQFW168 panicle length
31 CQB34 days to heading
32 AQAU002 brown planthopper resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007014 booting (+)
4 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005005 shoot internode (+)
3 PO:0009005 root (+)
4 PO:0009049 inflorescence (+)
5 PO:0020039 leaf lamina (+)
6 PO:0020103 flag leaf (+)
7 PO:0020104 leaf sheath (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000061 lesion length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Guo Lijia; Guo Chiming; Li Min; Wang Wujing; Luo Chengke; Zhang Yuxia; Chen Liang; Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice. Molecular biology reports 2014:
PMID [24420860]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India