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Searching for LOC_Os10g40100
[protein kinase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os10g40100.1 |
900 |
535 |
736 |
PF00069.17 |
Pkinase |
2 |
LOC_Os10g40100.1 |
900 |
824 |
896 |
PF04564.7 |
U-box |
3 |
LOC_Os10g40100.2 |
808 |
443 |
644 |
PF00069.17 |
Pkinase |
4 |
LOC_Os10g40100.2 |
808 |
732 |
804 |
PF04564.7 |
U-box |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005622 |
intracellular |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007105 |
abscisic acid regimen |
(+) |
2 |
EO:0007187 |
salicylic acid regimen |
(+) |
3 |
EO:0007198 |
water environment |
(+) |
4 |
MCE:1000056 |
1-aminocyclopropane-1-carboxylic acid |
(+) |
5 |
MCE:1000090 |
ethanol |
(+) |
6 |
MCE:1000302 |
Xanthomonas oryzae pv. oryzicola strain RS105 |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0001053 |
3 leaf fully expanded |
(+) |
3 |
PO:0007014 |
booting |
(+) |
4 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000061 |
lesion length |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Guo Lijia; Guo Chiming; Li Min; Wang Wujing; Luo Chengke; Zhang Yuxia; Chen Liang; Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice. Molecular biology reports 2014:
PMID [24420860]
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