Rice gene details
Searching for LOC_Os10g40720 [expansin precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g40720.1 269 79 158 PF03330.10 DPBB_1
2 LOC_Os10g40720.1 269 170 251 PF01357.13 Pollen_allerg_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  3
N22 Root FC
  -110
IR64 Flag-leaf FC
  -16
IR64InfloresenceFC
  1
IR64 Root FC
  -38

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0016043 cellular component organization (RGAP)
2 GO:0009653 anatomical structure morphogenesis (RGAP)
3 GO:0016049 cell growth (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)
2 GO:0005576 extracellular region (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK051 seed set percent
2 AQBK055 seed set percent
3 AQBI003 days to heading
4 AQBI006 pollen fertility
5 AQAM031 rhizome number
6 AQAM032 rhizome length
7 AQAM033 rhizome internode length
8 AQAM034 rhizome internode number
9 AQAM035 rhizome dry weight
10 AQFE065 seed set percent
11 AQFE066 seed set percent
12 AQGM012 panicle length
13 CQX24 internode length
14 AQFA012 grain width
15 AQEI074 leaf senescence
16 CQB34 days to heading
17 AQAU002 brown planthopper resistance
18 AQAK031 1000-seed weight
19 AQEX020 biomass yield
20 AQGI173 biomass yield
21 AQHR058 plant height
22 AQHR059 plant height
23 AQAG038 1000-seed weight
24 AQAG051 1000-seed weight
25 AQCU049 spikelet fertility
26 AQCU147 leaf width
27 AQCU175 spikelet fertility
28 CQAL11 chalkiness of endosperm

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Katou Shinpei; Kuroda Katsushi; Seo Shigemi; Yanagawa Yuki; Tsuge Tomohiko; Yamazaki Muneo; Miyao Akio; Hirochika Hirohiko; Ohashi Yuko; A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Plant & Cell Physiology 2007:48
PMID [17218330]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India