Rice gene details
Searching for LOC_Os10g41780 [chlorophyllide a oxygenase, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os10g41780.1 542 219 316 PF00355.18 Rieske
2 LOC_Os10g41780.1 542 407 506 PF08417.4 PaO
3 LOC_Os10g41780.2 542 219 316 PF00355.18 Rieske
4 LOC_Os10g41780.2 542 407 506 PF08417.4 PaO
5 LOC_Os10g41780.3 528 219 316 PF00355.18 Rieske
6 LOC_Os10g41780.3 528 407 503 PF08417.4 PaO
7 LOC_Os10g41780.4 527 204 301 PF00355.18 Rieske
8 LOC_Os10g41780.4 527 392 491 PF08417.4 PaO
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  3
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009579 thylakoid (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK051 seed set percent
2 AQBK055 seed set percent
3 AQBI003 days to heading
4 AQBI006 pollen fertility
5 AQGM012 panicle length
6 CQX24 internode length
7 AQFA012 grain width
8 CQB34 days to heading
9 AQAU002 brown planthopper resistance
10 AQAG038 1000-seed weight
11 AQAG051 1000-seed weight
12 AQCU049 spikelet fertility
13 AQCU147 leaf width
14 AQCU175 spikelet fertility
15 CQAL11 chalkiness of endosperm
16 AQAB013 spikelet number
17 AQEY022 1000-seed weight
18 AQEX006 plant height
19 AQEX027 root dry weight
20 AQEX033 total biomass yield
21 AQED025 panicle length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India