Rice gene details
Searching for LOC_Os11g03300 [NAC domain transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g03300.1 392 11 139 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  172
N22 Root FC
  -15
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -3
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009615 response to virus  
4 GO:0009620 response to fungus  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009751 response to salicylic acid stimulus  
8 GO:0009753 response to jasmonic acid stimulus  
9 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
10 GO:0030912 response to deep water  
11 GO:0009058 biosynthetic process (RGAP)
12 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
13 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007187 salicylic acid regimen (+)
4 EO:0007196 light regimen (+)
5 EO:0007226 Magnaporthe grisea (+)
6 EO:0007332 cold air temperature regimen (+)
7 EO:0007339 rice tungro spherical virus (+)
8 EO:0007350 rice stripe virus (+)
9 EO:0007404 drought environment (+)
10 EO:0007407 methyl jasmonate (+)
11 MCE:1000010 submergence stress (+)
12 MCE:1000016 polyethylene glycol (PEG) treatment (+)
13 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
14 MCE:1000075 recovery treatment (+)
15 MCE:1000183 laid-down submergence (+)
16 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQFQ005 flower number
8 AQED017 plant height
9 AQED018 plant height
10 AQE034 grain yield per panicle
11 AQE079 panicle number
12 AQE046 100-seed weight
13 AQE090 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000330 pre-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0007013 BO.03 late boot stage (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007098 LP.02 two leaves visible (+)
6 PO:0007115 LP.04 four leaves visible (+)
7 PO:0007616 4 anthesis (+)
8 PO:0007624 B meiosis of megaspore mother cell (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000258 root cortex (+)
3 PO:0006036 root epidermis (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009046 flower (+)
9 PO:0020033 coleoptile (+)
10 PO:0020103 flag leaf (+)
11 PO:0020124 root stele (+)
12 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000015 photochemical efficiency (+)
2 MCT:1000228 grain filling rate (+)
3 MCT:1000397 root diameter (+)
4 MCT:1000506 spikelet number per panicle (+)
5 TO:0000040 panicle length (+)
6 TO:0000078 root dry weight (+)
7 TO:0000085 leaf rolling (+)
8 TO:0000152 panicle number (+)
9 TO:0000227 root length (+)
10 TO:0000233 root volume (+)
11 TO:0000447 filled grain number (+)
12 TO:0000456 spikelet number (+)
13 TO:0000576 stem length (+)
14 TO:0000590 grain weight (+)
15 TO:0000592 1000-dehulled grain weight (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


Sun Lijun; Zhang Huijuan; Li Dayong; Huang Lei; Hong Yongbo; Ding Xin Shun; Nelson Richard S; Zhou Xueping; Song Fengming; Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea. Plant Molecular Biology 2012:
PMID [23103994]


Jeong Jin Seo; Kim Youn Shic; Baek Kwang Hun; Jung Harin; Ha Sun-Hwa; Do Choi Yang; Kim Minkyun; Reuzeau Christophe; Kim Ju-Kon; Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiology 2010:153
PMID [20335401]


Nuruzzaman Mohammed; Manimekalai Ramaswamy; Sharoni Akhter Most; Satoh Kouji; Kondoh Hiroaki; Ooka Hisako; Kikuchi Shoshi; Genome-wide analysis of NAC transcription factor family in rice. Gene 2010:465
PMID [20600702]


Fang Yujie; You Jun; Xie Kabin; Xie Weibo; Xiong Lizhong; Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Molecular Genetics and Genomics 2008:280
PMID [18813954]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India