Rice gene details
Searching for LOC_Os11g03370 [no apical meristem protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g03370.1 360 19 159 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  4
N22 Root FC
  -11
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -2
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009615 response to virus  
3 GO:0009651 response to salt stress  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007339 rice tungro spherical virus (+)
5 EO:0007350 rice stripe virus (+)
6 EO:0007404 drought environment (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQFQ005 flower number
8 AQED017 plant height
9 AQED018 plant height
10 AQE034 grain yield per panicle
11 AQE079 panicle number
12 AQE046 100-seed weight
13 AQE090 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000110 1 day pre-heading stage (+)
2 MCP:1000136 5 days pre-heading stage (+)
3 MCP:1000194 inflorescence 4-5cm stage (+)
4 MCP:1000288 7 days post-anthesis stage (+)
5 MCP:1000330 pre-anthesis stage (+)
6 MCP:1000436 14 days post-anthesis stage (+)
7 MCP:1000482 21 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
10 PO:0007098 LP.02 two leaves visible (+)
11 PO:0007106 LP.03 three leaves visible (+)
12 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009025 vascular leaf (+)
7 PO:0009029 stamen (+)
8 PO:0009047 stem (+)
9 PO:0009089 endosperm (+)
10 PO:0020104 leaf sheath (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]


Nuruzzaman Mohammed; Manimekalai Ramaswamy; Sharoni Akhter Most; Satoh Kouji; Kondoh Hiroaki; Ooka Hisako; Kikuchi Shoshi; Genome-wide analysis of NAC transcription factor family in rice. Gene 2010:465
PMID [20600702]


Fang Yujie; You Jun; Xie Kabin; Xie Weibo; Xiong Lizhong; Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Molecular Genetics and Genomics 2008:280
PMID [18813954]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India