Rice gene details
Searching for LOC_Os11g04020 [major facilitator superfamily antiporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g04020.1 474 42 424 PF07690.8 MFS_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010039 response to iron ion  
2 GO:0010106 cellular response to iron ion starvation  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQFQ005 flower number
8 AQED017 plant height
9 AQED018 plant height
10 AQE034 grain yield per panicle
11 AQE079 panicle number
12 AQE046 100-seed weight
13 AQE090 tiller number
14 CQAN19 plant height
15 CQP8 cold tolerance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Pereira Margarida P; Santos Carla; Gomes Ana; Vasconcelos Marta W; Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.). Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale 2014:85C
PMID [25394797]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India