Rice gene details
Searching for LOC_Os11g04460 [calcium-transporting ATPase, plasma membrane-type, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g04460.1 1018 93 169 PF00690.18 Cation_ATPase_N
2 LOC_Os11g04460.1 1018 183 424 PF00122.12 E1-E2_ATPase
3 LOC_Os11g04460.1 1018 428 757 PF00702.18 Hydrolase
4 LOC_Os11g04460.1 1018 818 993 PF00689.13 Cation_ATPase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009409 response to cold  
3 GO:0009651 response to salt stress  
4 GO:0006810 transport (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0008219 cell death (RGAP)
7 GO:0006950 response to stress (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
9 GO:0009607 response to biotic stimulus (RGAP)
10 GO:0008150 biological_process (RGAP)
11 GO:0009056 catabolic process (RGAP)
12 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005773 vacuole (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQFQ005 flower number
8 AQED017 plant height
9 AQED018 plant height
10 AQE034 grain yield per panicle
11 AQE079 panicle number
12 AQE046 100-seed weight
13 AQE090 tiller number
14 CQAN19 plant height
15 CQP8 cold tolerance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Kamrul Huda Kazi Md; Yadav Sandep; Akhter Banu Mst Sufara; Trivedi Dipesh Kumar; Tuteja Narendra; Genome-wide analysis of plant-type II Ca(2+)ATPases gene family from rice and Arabidopsis: Potential role in abiotic stresses. Plant Physiology and Biochemistry 2013: 65C
PMID [23416494]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India