Rice gene details
Searching for LOC_Os11g06720 [abscisic stress-ripening, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g06720.1 139 49 128 PF02496.8 ABA_WDS
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0001101 response to acid  
2 GO:0006950 response to stress  
3 GO:0006979 response to oxidative stress  
4 GO:0009408 response to heat  
5 GO:0009409 response to cold  
6 GO:0009605 response to external stimulus  
7 GO:0009628 response to abiotic stimulus  
8 GO:0009651 response to salt stress  
9 GO:0009737 response to abscisic acid stimulus  
10 GO:0032571 response to vitamin K  
11 GO:0033273 response to vitamin  
12 GO:0045471 response to ethanol  
13 GO:0046688 response to copper ion  
14 GO:0050896 response to stimulus  
15 GO:0080134 regulation of response to stress  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007187 salicylic acid regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007415 hydrogen peroxide (+)
7 EO:0007527 cupric sulfate (+)
8 MCE:1000090 ethanol (+)
9 MCE:1000233 menadione (+)
10 MCE:1000234 sulfuric acid regimen (+)
11 MCE:1000235 lactic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQED017 plant height
8 AQED018 plant height
9 AQE034 grain yield per panicle
10 AQE079 panicle number
11 AQE046 100-seed weight
12 AQE090 tiller number
13 CQAS141 spikelet number
14 AQFP025 culm thickness
15 AQAL058 rooting depth
16 AQT016 seed length
17 AQBJ005 large vascular bundle number
18 AQEX007 plant height
19 AQEX021 biomass yield
20 AQEX028 root dry weight
21 AQEX034 total biomass yield
22 AQGE007 cooked kernel elongation
23 CQE78 specific leaf area
24 AQY004 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000047 inflorescence 1-2cm stage (+)
2 MCP:1000048 inflorescence 3-8cm stage (+)
3 MCP:1000458 6 days post-anthesis stage (+)
4 MCP:1000489 3 days post-anthesis stage (+)
5 MCP:1000518 seedling development stage (+)
6 PO:0007013 BO.03 late boot stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 PO:0005052 plant callus (-)
3 PO:0005645 leaf mesophyll (+)
4 PO:0006318 Poaceae floret (+)
5 PO:0006340 adult leaf (+)
6 PO:0008037 seedling (+)
7 PO:0009005 root (+)
8 PO:0009006 shoot system (+)
9 PO:0009010 seed (+)
10 PO:0009025 vascular leaf (+)
11 PO:0009037 lemma (+)
12 PO:0009038 palea (+)
13 PO:0009049 inflorescence (+)
14 PO:0020103 flag leaf (+)
15 PO:0020104 leaf sheath (+)
16 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000015 photochemical efficiency (+)
2 MCT:1000074 cell viability (+)
3 MCT:1000092 cell death (+)
4 MCT:1000104 plant cell number (+)
5 TO:0000605 hydrogen peroxide content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kim Il-Sup; Kim Young-Saeng; Yoon Ho-Sung; Rice ASR1 protein with reactive oxygen species scavenging and chaperone-like activities enhances acquired tolerance to abiotic stresses in Saccharomyces cerevisiae. Molecules and cells 2012:
PMID [22382682]


2  Kim Soo-Jin; Lee Sang-Choon; Hong Soon Kwan; An Kyungsook; An Gynheung; Kim Seong-Ryong; Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants. Molecules and Cells 2009:27
PMID [19390826]


3  Ge Liang-Fa; Chao Dai-Yin; Shi Min; Zhu Mei-Zhen; Gao Ji-Ping; Lin Hong-Xuan; Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes. Planta 2008:228
PMID [18365248]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India