Rice gene details
Searching for LOC_Os11g07600 [ABC-2 type transporter domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g07600.1 613 69 257 PF00005.19 ABC_tran
2 LOC_Os11g07600.1 613 360 566 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  6

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009651 response to salt stress  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009753 response to jasmonic acid stimulus  
8 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
9 GO:0010555 response to mannitol stimulus  
10 GO:0006810 transport (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0009056 catabolic process (RGAP)
13 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
14 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY0-163 salvage pathways of pyrimidine ribonucleotides
2 PYRIDOXSYN-PWY pyridoxal 5'-phosphate biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQF104 KClO3 resistance
4 CQAH41 grain shattering
5 CQAH44 seed dormancy
6 AQBK033 spikelet number
7 AQED017 plant height
8 AQED018 plant height
9 AQE034 grain yield per panicle
10 AQE079 panicle number
11 AQE046 100-seed weight
12 AQE090 tiller number
13 CQAS141 spikelet number
14 AQFP025 culm thickness
15 AQAL058 rooting depth
16 AQT016 seed length
17 AQEX007 plant height
18 AQEX021 biomass yield
19 AQEX028 root dry weight
20 AQEX034 total biomass yield
21 AQGE007 cooked kernel elongation
22 CQE78 specific leaf area
23 AQY004 plant height
24 AQCW017 H2O2 content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India