Rice gene details
Searching for LOC_Os11g08210 [no apical meristem protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g08210.1 330 9 134 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  3
N22 Root FC
  -6
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006865 amino acid transport  
2 GO:0006879 cellular iron ion homeostasis  
3 GO:0006882 cellular zinc ion homeostasis  
4 GO:0006950 response to stress  
5 GO:0009409 response to cold  
6 GO:0009414 response to water deprivation  
7 GO:0009415 response to water  
8 GO:0009416 response to light stimulus  
9 GO:0009632 freezing tolerance  
10 GO:0009633 drought tolerance  
11 GO:0009651 response to salt stress  
12 GO:0009737 response to abscisic acid stimulus  
13 GO:0009741 response to brassinosteroid stimulus  
14 GO:0009751 response to salicylic acid stimulus  
15 GO:0009753 response to jasmonic acid stimulus  
16 GO:0009819 drought recovery  
17 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
18 GO:0010106 cellular response to iron ion starvation  
19 GO:0042538 hyperosmotic salinity response  
20 GO:0071475 cellular hyperosmotic salinity response  
21 GO:0006950 response to stress (RGAP)
22 GO:0009058 biosynthetic process (RGAP)
23 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
24 GO:0007275 multicellular organismal development (RGAP)
25 GO:0009719 response to endogenous stimulus (RGAP)
26 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007173 warm/hot temperature regimen (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007332 cold air temperature regimen (+)
7 EO:0007338 cold water temperature regimen (+)
8 EO:0007383 watering regimen (+)
9 EO:0007404 drought environment (+)
10 EO:0007407 methyl jasmonate (+)
11 MCE:1000014 methyl jasmonic acid (+)
12 MCE:1000016 polyethylene glycol (PEG) treatment (+)
13 MCE:1000023 benzyl aminopurine (BPA) (+)
14 MCE:1000044 mannitol (+)
15 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
16 MCE:1000063 epibrassinolide (+)
17 MCE:1000069 dessication/dehydration stress (+)
18 MCE:1000075 recovery treatment (+)
19 MCE:1000143 iron deficiency treatment (+)
20 MCE:1000171 nicotin amide (+)
21 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQBK033 spikelet number
4 AQE046 100-seed weight
5 AQE090 tiller number
6 CQAS141 spikelet number
7 AQFP025 culm thickness
8 AQAL058 rooting depth
9 AQT016 seed length
10 AQEX007 plant height
11 AQEX021 biomass yield
12 AQEX028 root dry weight
13 AQEX034 total biomass yield
14 AQGE007 cooked kernel elongation
15 CQE78 specific leaf area
16 AQY004 plant height
17 AQCW017 H2O2 content
18 AQED005 days to heading
19 AQD020 leaf drying
20 AQHE040 root thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000120 4-6 days post-anthesis stage (-)
2 MCP:1000287 4 days post-anthesis stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000520 young inflorescence stage (-)
5 MCP:1000521 mature plant stage (+)
6 PO:0001053 3 leaf fully expanded (+)
7 PO:0007001 FR.01 early stage of fruit ripening (+)
8 PO:0007010 6 ripening (+)
9 PO:0007013 BO.03 late boot stage (-)
10 PO:0007041 inflorescence emergence from flag leaf sheath (+)
11 PO:0007042 5 fruit formation (+)
12 PO:0007616 4 anthesis (+)
13 PO:0007632 seed maturation stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000490 root cortex, first layer (+)
2 MCP:1000491 root cortex, second layer (+)
3 MCP:1000492 root cortex, third layer (+)
4 PO:0000001 embryo proper (+)
5 PO:0000003 whole plant (+)
6 PO:0000372 metaxylem (+)
7 PO:0005052 plant callus (+)
8 PO:0005702 aerenchyma (+)
9 PO:0008037 seedling (+)
10 PO:0009005 root (+)
11 PO:0009006 shoot system (+)
12 PO:0009010 seed (+)
13 PO:0009025 vascular leaf (+)
14 PO:0009046 flower (+)
15 PO:0009047 stem (+)
16 PO:0009049 inflorescence (+)
17 PO:0020039 leaf lamina (+)
18 PO:0020103 flag leaf (+)
19 PO:0020124 root stele (+)
20 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000014 electrolyte leakage (+)
3 MCT:1000015 photochemical efficiency (+)
4 MCT:1000037 malondialdehyde (MDA) content (+)
5 MCT:1000104 plant cell number (+)
6 MCT:1000208 leaf whitening (+)
7 MCT:1000228 grain filling rate (+)
8 MCT:1000390 stele size (+)
9 MCT:1000397 root diameter (+)
10 MCT:1000539 metaxylem vessel size (+)
11 MCT:1000540 cortical aerenchyma size (+)
12 MCT:1000542 relative variable chlorophyll fluorescence (+)
13 TO:0000019 seedling height (+)
14 TO:0000078 root dry weight (+)
15 TO:0000085 leaf rolling (+)
16 TO:0000207 plant height (+)
17 TO:0000227 root length (+)
18 TO:0000233 root volume (+)
19 TO:0000340 total soluble sugar content (+)
20 TO:0000442 plant fresh weight (+)
21 TO:0000525 sodium to potassium content ratio (+)
22 TO:0000590 grain weight (+)
23 TO:0000605 hydrogen peroxide content (+)
24 TO:0000608 sodium content (+)
25 TO:0000609 potassium content (+)
26 TO:0006002 proline content (+)
27 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os01g66120 1-162 LOC_Os11g08210 - 1-328 Protein-protein interaction analysis : Pull Down Assay
2 LOC_Os03g60080 1-176 LOC_Os11g08210 - 1-328 Protein-protein interaction analysis : Pull Down Assay
3 LOC_Os11g08210 1-172 LOC_Os11g08210 - 1-328 Protein-protein interaction analysis : Pull Down Assay
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os11g08210 1-172 - to - S000413 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2 LOC_Os11g08210 N 1-172 LOC_Os05g46480 - -85 to -56 TSS S000413 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


2  Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]


3  Sperotto Raul A; Boff Tatiana; Duarte Guilherme L; Santos Lívia S; Grusak Michael A; Fett Janette P; Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. Journal of Plant Physiology 2010:167
PMID [20580124]


4  Takasaki Hironori; Maruyama Kyonoshin; Kidokoro Satoshi; Ito Yusuke; Fujita Yasunari; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Nakashima Kazuo; The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Molecular Genetics and Genomics 2010:284
PMID [20632034]


5  Sperotto Raul A; Ricachenevsky Felipe K; Duarte Guilherme L; Boff Tatiana; Lopes Karina L; Sperb Edilena R; Grusak Michael A; Fett Janette Palma; Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta 2009:230
PMID [19697058]


6  Kikuchi K; Ueguchi-Tanaka M; Yoshida K T; Nagato Y; Matsusoka M; Hirano H Y; Molecular analysis of the NAC gene family in rice. Molecular & General Genetics 2000:262
PMID [10660065]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India