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Searching for LOC_Os11g08210
[no apical meristem protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os11g08210.1 |
330 |
9 |
134 |
PF02365.7 |
NAM |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016563 |
transcription activator activity |
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2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
1 |
LOC_Os01g66120 |
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1-162 |
LOC_Os11g08210 |
- |
1-328 |
Protein-protein interaction analysis : Pull Down Assay |
2 |
LOC_Os03g60080 |
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1-176 |
LOC_Os11g08210 |
- |
1-328 |
Protein-protein interaction analysis : Pull Down Assay |
3 |
LOC_Os11g08210 |
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1-172 |
LOC_Os11g08210 |
- |
1-328 |
Protein-protein interaction analysis : Pull Down Assay |
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Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
LOC_Os11g08210 |
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1-172 |
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- |
to |
- |
S000413  |
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
2 |
LOC_Os11g08210 |
N |
1-172 |
LOC_Os05g46480 |
- |
-85 to -56 |
TSS |
S000413  |
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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Related publications [Sorted by year] |
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1 |
Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]
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2 |
Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]
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3 |
Sperotto Raul A; Boff Tatiana; Duarte Guilherme L; Santos LÃvia S; Grusak Michael A; Fett Janette P; Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. Journal of Plant Physiology 2010:167
PMID [20580124]
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4 |
Takasaki Hironori; Maruyama Kyonoshin; Kidokoro Satoshi; Ito Yusuke; Fujita Yasunari; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Nakashima Kazuo; The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Molecular Genetics and Genomics 2010:284
PMID [20632034]
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5 |
Sperotto Raul A; Ricachenevsky Felipe K; Duarte Guilherme L; Boff Tatiana; Lopes Karina L; Sperb Edilena R; Grusak Michael A; Fett Janette Palma; Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta 2009:230
PMID [19697058]
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6 |
Kikuchi K; Ueguchi-Tanaka M; Yoshida K T; Nagato Y; Matsusoka M; Hirano H Y; Molecular analysis of the NAC gene family in rice. Molecular & General Genetics 2000:262
PMID [10660065]
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