Rice gene details
Searching for LOC_Os11g08340 [OsGH3.12 - Probable indole-3-acetic acid-amido synthetase ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g08340.1 614 16 596 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016740 transferase activity (RGAP)
3 GO:0003824 catalytic activity (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0006464 protein modification process (RGAP)
3 GO:0009719 response to endogenous stimulus (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009605 response to external stimulus (RGAP)
11 GO:0007165 signal transduction (RGAP)
12 GO:0008152 metabolic process (RGAP)
13 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQBK033 spikelet number
4 AQE046 100-seed weight
5 AQE090 tiller number
6 CQAS141 spikelet number
7 AQFP025 culm thickness
8 AQAL058 rooting depth
9 AQT016 seed length
10 AQEX007 plant height
11 AQEX021 biomass yield
12 AQEX028 root dry weight
13 AQEX034 total biomass yield
14 AQGE007 cooked kernel elongation
15 CQE78 specific leaf area
16 AQY004 plant height
17 AQCW017 H2O2 content
18 AQED005 days to heading
19 AQD020 leaf drying
20 AQHE040 root thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India