Rice gene details
Searching for LOC_Os11g10480 [dehydrogenase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g10480.1 380 34 163 PF08240.4 ADH_N
2 LOC_Os11g10480.1 380 194 336 PF00107.18 ADH_zinc_N
3 LOC_Os11g10480.2 346 2 129 PF08240.4 ADH_N
4 LOC_Os11g10480.2 346 160 302 PF00107.18 ADH_zinc_N
5 LOC_Os11g10480.4 269 83 225 PF00107.18 ADH_zinc_N
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -3
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009651 response to salt stress  
3 GO:0034059 response to anoxia  
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0006091 generation of precursor metabolites and energy (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007025 anaerobic environment (+)
3 EO:0007048 sodium chloride regimen (+)
4 EO:0007068 ethylene regimen (+)
5 EO:0007075 high light intensity regimen (+)
6 EO:0007105 abscisic acid regimen (+)
7 EO:0007332 cold air temperature regimen (+)
8 EO:0007404 drought environment (+)
9 MCE:1000010 submergence stress (+)
10 MCE:1000075 recovery treatment (+)
11 MCE:1000091 methyl viologen/paraquat (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I
2 P127-PWY ethanol fermentation to acetate
3 PWY-2582 brassinosteroid biosynthesis II
4 PWY-5079 phenylalanine degradation III
5 PWY-5082 methionine degradation III
6 PWY-841 purine nucleotides de novo biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQE046 100-seed weight
4 AQE090 tiller number
5 CQAS141 spikelet number
6 AQFP025 culm thickness
7 AQT016 seed length
8 CQE78 specific leaf area
9 AQY004 plant height
10 AQED005 days to heading
11 AQD020 leaf drying
12 AQHE040 root thickness
13 AQCG004 male fertility restoration
14 CQAN4 sheath blight disease resistance
15 CQAN8 sheath blight disease resistance
16 AQAL037 biomass yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
3 PO:0009025 vascular leaf (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]


Park Hee-Yeon; Kang In Soon; Han Ji-Sung; Lee Choon-Hwan; An Gynheung; Moon Yong-Hwan; OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling. Biochemical and Biophysical Research Communications 2009:380
PMID [19285007]


Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]


Xu Kenong; Xu Xia; Fukao Takeshi; Canlas Patrick; Maghirang-Rodriguez Reycel; Heuer Sigrid; Ismail Abdelbagi M; Bailey-Serres Julia; Ronald Pamela C; Mackill David J; Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 2006:442
PMID [16900200]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India