Rice gene details
Searching for LOC_Os11g10510 [dehydrogenase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g10510.1 380 34 163 PF08240.4 ADH_N
2 LOC_Os11g10510.1 380 194 336 PF00107.18 ADH_zinc_N
3 LOC_Os11g10510.2 315 34 163 PF08240.4 ADH_N
4 LOC_Os11g10510.2 315 194 286 PF00107.18 ADH_zinc_N
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  -16
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  -5

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0008150 biological_process (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)
3 MCE:1000010 submergence stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DTDPRHAMSYN-PWY dTDP-L-rhamnose biosynthesis I
2 GDPRHAMSYN-PWY GDP-D-rhamnose biosynthesis
3 P127-PWY ethanol fermentation to acetate
4 PWY-101 photosynthesis, light reaction
5 PWY-5079 phenylalanine degradation III
6 PWY-5082 methionine degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQE046 100-seed weight
4 AQE090 tiller number
5 CQAS141 spikelet number
6 AQFP025 culm thickness
7 AQT016 seed length
8 CQE78 specific leaf area
9 AQY004 plant height
10 AQED005 days to heading
11 AQD020 leaf drying
12 AQHE040 root thickness
13 AQCG004 male fertility restoration
14 CQAN4 sheath blight disease resistance
15 CQAN8 sheath blight disease resistance
16 AQAL037 biomass yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Fukao Takeshi; Harris Tristan; Bailey-Serres Julia; Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Annals of Botany 2009:103
PMID [18824474]


Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India