Rice gene details
Searching for LOC_Os11g26750 [dehydrin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g26750.1 152 12 151 PF00257.11 Dehydrin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  16
N22InfloresenceFC
  103
N22 Root FC
  2790
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
  178

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009408 response to heat  
3 GO:0009409 response to cold  
4 GO:0009414 response to water deprivation  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0006950 response to stress (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQT016 seed length
4 AQED005 days to heading
5 AQAL037 biomass yield
6 CQX20 internode length
7 AQFP007 culm thickness
8 AQEB009 1000-seed weight
9 AQEB014 1000-seed weight
10 CQAE12 panicle number
11 CQAE18 grain number
12 CQAE22 1000-grain weight
13 CQAE25 grain yield per plant
14 AQFP003 culm thickness
15 AQAC054 seed weight
16 AQAG052 1000-seed weight
17 AQAI077 1000-grain weight
18 AQCA006 seed length
19 AQGE025 grain weight
20 AQGE031 grain weight
21 AQQ035 seed weight
22 CQAL32 grain length
23 AQHR026 tiller number
24 AQHR061 plant height
25 AQHR062 plant height
26 AQCU050 spikelet fertility
27 AQCU051 spikelet fertility
28 AQCU081 leaf width
29 AQCU091 spikelet number
30 AQCU099 spikelet number
31 AQCU195 plant height
32 AQCU247 spikelet number
33 AQCU251 spikelet number
34 AQCU261 spikelet fertility
35 CQL12 relative root length
36 AQAP050 brown planthopper resistance
37 AQCU077 leaf width
38 AQCU193 plant height
39 AQAP030 brown planthopper resistance
40 AQAQ017 blast disease resistance
41 AQCU056 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000005 cultured plant cell (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009009 plant embryo (+)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020104 leaf sheath (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Rerksiri Wirat; Zhang Xianwen; Xiong Hairong; Chen Xinbo; Expression and promoter analysis of six heat stress-inducible genes in rice. The Scientific World Journal 2013:2013
PMID [24459431]


Du Hao; Liu Linhong; You Lei; Yang Mei; He Yubing; Li Xianghua; Xiong Lizhong; Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Molecular Biology 2011:
PMID [22038091]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Yamaguchi-Shinozaki K; Mundy J; Chua N H; Four tightly linked rab genes are differentially expressed in rice. Plant Molecular Biology 1990:14
PMID [2151651]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India