Rice gene details
Searching for LOC_Os11g26780 [dehydrin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g26780.1 165 12 164 PF00257.11 Dehydrin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  19
N22InfloresenceFC
  53
N22 Root FC
  1505
IR64 Flag-leaf FC
  46
IR64InfloresenceFC
  14
IR64 Root FC
  47

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009414 response to water deprivation  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007404 drought environment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQT016 seed length
4 AQED005 days to heading
5 AQAL037 biomass yield
6 CQX20 internode length
7 AQFP007 culm thickness
8 AQEB009 1000-seed weight
9 AQEB014 1000-seed weight
10 CQAE12 panicle number
11 CQAE18 grain number
12 CQAE22 1000-grain weight
13 CQAE25 grain yield per plant
14 AQFP003 culm thickness
15 AQAC054 seed weight
16 AQAG052 1000-seed weight
17 AQAI077 1000-grain weight
18 AQCA006 seed length
19 AQGE025 grain weight
20 AQGE031 grain weight
21 AQQ035 seed weight
22 CQAL32 grain length
23 AQHR026 tiller number
24 AQHR061 plant height
25 AQHR062 plant height
26 AQCU050 spikelet fertility
27 AQCU051 spikelet fertility
28 AQCU081 leaf width
29 AQCU091 spikelet number
30 AQCU099 spikelet number
31 AQCU195 plant height
32 AQCU247 spikelet number
33 AQCU251 spikelet number
34 AQCU261 spikelet fertility
35 CQL12 relative root length
36 AQAP050 brown planthopper resistance
37 AQCU077 leaf width
38 AQCU193 plant height
39 AQAP030 brown planthopper resistance
40 AQAQ017 blast disease resistance
41 AQCU056 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000505 30 days post-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nakashima Kazuo; Jan Asad; Todaka Daisuke; Maruyama Kyonoshin; Goto Shingo; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta 2014:239
PMID [24062085]


Chen Hao; Chen Wei; Zhou Junli; He Hang; Chen Liangbi; Chen Haodong; Deng Xing Wang; Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice. Plant Science 2012: 193-194
PMID [22794914]


Bae Hansol; Kim Sung Keun; Cho Seok Keun; Kang Bin Goo; Kim Woo Taek; Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.). Plant Science 2011:180
PMID [21497713]


Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]


Yamaguchi-Shinozaki K; Mundy J; Chua N H; Four tightly linked rab genes are differentially expressed in rice. Plant Molecular Biology 1990:14
PMID [2151651]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India