Rice gene details
Searching for LOC_Os11g26790 [dehydrin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g26790.1 173 11 172 PF00257.11 Dehydrin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  27
N22InfloresenceFC
  114
N22 Root FC
  491
IR64 Flag-leaf FC
  18
IR64InfloresenceFC
  20
IR64 Root FC
  99

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009628 response to abiotic stimulus  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0006950 response to stress (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007332 cold air temperature regimen (-)
5 EO:0007404 drought environment (+)
6 MCE:1000010 submergence stress (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000038 cycloheximide (+)
9 MCE:1000044 mannitol (+)
10 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN42 leaf senescence
2 CQN61 spikelet weight
3 AQT016 seed length
4 AQED005 days to heading
5 AQAL037 biomass yield
6 CQX20 internode length
7 AQFP007 culm thickness
8 AQEB009 1000-seed weight
9 AQEB014 1000-seed weight
10 CQAE12 panicle number
11 CQAE18 grain number
12 CQAE22 1000-grain weight
13 CQAE25 grain yield per plant
14 AQFP003 culm thickness
15 AQAC054 seed weight
16 AQAG052 1000-seed weight
17 AQAI077 1000-grain weight
18 AQCA006 seed length
19 AQGE025 grain weight
20 AQGE031 grain weight
21 AQQ035 seed weight
22 CQAL32 grain length
23 AQHR026 tiller number
24 AQHR061 plant height
25 AQHR062 plant height
26 AQCU050 spikelet fertility
27 AQCU051 spikelet fertility
28 AQCU081 leaf width
29 AQCU091 spikelet number
30 AQCU099 spikelet number
31 AQCU195 plant height
32 AQCU247 spikelet number
33 AQCU251 spikelet number
34 AQCU261 spikelet fertility
35 CQL12 relative root length
36 AQAP050 brown planthopper resistance
37 AQCU077 leaf width
38 AQCU193 plant height
39 AQAP030 brown planthopper resistance
40 AQAQ017 blast disease resistance
41 AQCU056 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000213 5-6 days post-anthesis stage (+)
2 MCP:1000454 10 days post-anthesis stage (+)
3 MCP:1000473 20 days post-anthesis stage (+)
4 MCP:1000505 30 days post-anthesis stage (+)
5 MCP:1000518 seedling development stage (+)
6 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0000003 whole plant (+)
3 PO:0000005 cultured plant cell (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0009025 vascular leaf (+)
9 PO:0025034 leaf (+)
10 PO:0025060 lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000383 root length percentage decrease (+)
2 MCT:1000475 shoot growth inhibition (+)
3 TO:0000085 leaf rolling (+)
4 TO:0000180 spikelet fertility (+)
5 TO:0000207 plant height (+)
6 TO:0000280 seedling vigor (+)
7 TO:0000346 tiller number (+)
8 TO:0000449 grain yield per plant (+)
9 TO:0000495 chlorophyll content (+)
10 TO:0000608 sodium content (+)
11 TO:0000609 potassium content (+)
12 TO:0006002 proline content (+)
13 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 AAB40291 - --- LOC_Os11g26790 - -166 to -188 - S000007 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2 AAB40291 - --- LOC_Os11g26790 - 166 to 188 - S000007 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
3 AAT64973 - --- LOC_Os11g26790 - 1 to 294 - Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
4 AAT64973 - --- LOC_Os11g26790 - 1 to 294 - Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
5 AAT64973 - --- LOC_Os11g26790 - 1 to 294 - S000015 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
6 AAT64973 - --- LOC_Os11g26790 - 1 to 294 - Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
7 BAA83740 - --- LOC_Os11g26790 - - - - S000007 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Endo Akira; Nelson Ken M; Thoms Ken; Abrams Suzanne R; Nambara Eiji; Sato Yutaka; Functional characterization of xanthoxin dehydrogenase in rice. Journal of plant physiology 2014:171
PMID [25014258]


Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]


Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Chen Hao; Chen Wei; Zhou Junli; He Hang; Chen Liangbi; Chen Haodong; Deng Xing Wang; Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice. Plant Science 2012: 193-194
PMID [22794914]


Ganguly Moumita; Datta Karabi; Roychoudhury Aryadeep; Gayen Dipak; Sengupta Dibyendu N; Datta Swapan K; Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance. Plant Signaling & Behavior 2012:7
PMID [22499169]


Liu Dongfeng; Chen Xujun; Liu Jiqin; Ye Jianchun; Guo Zejian; The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany 2012:63
PMID [22442415]


Tang Ning; Zhang Hua; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice. Plant physiology 2012:158
PMID [22301130]


Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]


10  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]


11  Kim Hyunmi; Hwang Hyunsik; Hong Jung-Woo; Lee Young-Na; Ahn Il Pyung; Yoon In Sun; Yoo Sang-Dong; Lee Sukchan; Lee Sung Chul; Kim Beom-Gi; A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. Journal of Experimental Botany 2011:
PMID [22071266]


12  Piao Hai-long; Xuan Yuan-hu; Park Su Hyun; Je Byoung Il; Park Soon Ju; Park Sung Han; Kim Chul Min; Huang Jin; Wang Guo Kui; Kim Min Jung; Kang Sang Mo; Lee In-Jung; Kwon Taek-Ryoun; Kim Yong Hwan; Yeo Un-sang; Yi Gihwan; Son DaeYoung; Han Chang-deok; OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants. Molecules and Cells 2010:30
PMID [20652492]


13  Lu Guojun; Gao Chenxi; Zheng Xingnan; Han Bin; Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta 2009:229
PMID [19048288]


14  Zhang Lei; Tian Li-Hong; Zhao Jun-Feng; Song Yun; Zhang Cui-Jun; Guo Yi; Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis. Plant Physiology 2009:149
PMID [19036832]


15  Mukherjee Kakali; Choudhury Aryadeep Roy; Gupta Bhaskar; Gupta Sudhiranjan; Sengupta Dibyendu N; An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice. BMC plant biology 2006:6
PMID [16939657]


16  Nakagawa H; Ohmiya K; Hattori T; A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid. The Plant journal 1996:9
PMID [8820608]


17  Yamaguchi-Shinozaki K; Mundy J; Chua N H; Four tightly linked rab genes are differentially expressed in rice. Plant Molecular Biology 1990:14
PMID [2151651]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India