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Searching for LOC_Os11g32100
[inducer of CBF expression 1, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os11g32100.1 |
525 |
335 |
382 |
PF00010.18 |
HLH |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016563 |
transcription activator activity |
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2 |
GO:0003677 |
DNA binding |
(RGAP) |
3 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0006979 |
response to oxidative stress |
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2 |
GO:0009651 |
response to salt stress |
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3 |
GO:0030154 |
cell differentiation |
(RGAP) |
4 |
GO:0009791 |
post-embryonic development |
(RGAP) |
5 |
GO:0009058 |
biosynthetic process |
(RGAP) |
6 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
7 |
GO:0006950 |
response to stress |
(RGAP) |
8 |
GO:0009628 |
response to abiotic stimulus |
(RGAP) |
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Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
EO:0007332 |
cold air temperature regimen |
(+) |
4 |
MCE:1000044 |
mannitol |
(+) |
5 |
MCE:1000075 |
recovery treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
MCP:1000521 |
mature plant stage |
(+) |
3 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000012 |
survival rate |
(+) |
2 |
MCT:1000020 |
oxidative stress tolerance |
(+) |
3 |
MCT:1000066 |
leaf discoloration percentage |
(+) |
4 |
TO:0000227 |
root length |
(+) |
5 |
TO:0010001 |
percent germination |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]
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2 |
Zhou Jing; Li Fei; Wang Jin-Lan; Ma Yun; Chong Kang; Xu Yun-yuan; Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis. Journal of Plant Physiology 2009:166
PMID [19324458]
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