Rice gene details
Searching for LOC_Os11g32100 [inducer of CBF expression 1, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g32100.1 525 335 382 PF00010.18 HLH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003677 DNA binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009651 response to salt stress  
3 GO:0030154 cell differentiation (RGAP)
4 GO:0009791 post-embryonic development (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
7 GO:0006950 response to stress (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 MCE:1000044 mannitol (+)
5 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN61 spikelet weight
2 AQFP007 culm thickness
3 AQEB009 1000-seed weight
4 AQEB014 1000-seed weight
5 CQAE12 panicle number
6 CQAE18 grain number
7 CQAE22 1000-grain weight
8 CQAE25 grain yield per plant
9 AQCU050 spikelet fertility
10 AQCU051 spikelet fertility
11 AQCU081 leaf width
12 AQCU091 spikelet number
13 AQCU099 spikelet number
14 AQCU195 plant height
15 AQCU247 spikelet number
16 AQCU251 spikelet number
17 AQCU261 spikelet fertility
18 AQAP050 brown planthopper resistance
19 AQCU077 leaf width
20 AQCU193 plant height
21 AQAP030 brown planthopper resistance
22 AQAQ017 blast disease resistance
23 AQCU056 days to heading
24 AQFT023 root pulling force
25 AQF024 seed dormancy
26 AQF042 seed dormancy
27 CQAH46 seed dormancy
28 CQAH47 seed dormancy
29 CQAH48 seed dormancy
30 CQH36 root pulling force
31 CQE79 carbon content
32 CQE80 space
33 CQAD6 allelopathic effect
34 CQN24 glutamine synthetase content
35 AQF018 seed dormancy
36 AQF035 seed dormancy
37 AQF053 awn length
38 AQF074 anther length
39 AQS004 sheath blight disease resistance
40 AQAO001 blast disease resistance
41 CQAW30 tiller number
42 CQAW31 root penetration index
43 AQEN009 blast disease resistance
44 AQEN016 blast disease resistance
45 AQEN019 blast disease resistance
46 AQEN049 blast disease resistance
47 AQEN057 blast disease resistance
48 AQHQ012 days to flower
49 AQHQ021 days to flower
50 CQAX10 plant height
51 AQAB064 large vascular bundle number
52 AQAI025 large vascular bundle number
53 CQAR42 spikelet number
54 CQAR43 spikelet density
55 AQO010 biomass yield
56 AQO047 root thickness
57 AQO091 root number
58 DQC11 penetrated root number
59 DQC18 penetrated to total root ratio
60 CQN48 panicle weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009010 seed (+)
7 PO:0009047 stem (+)
8 PO:0009049 inflorescence (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000020 oxidative stress tolerance (+)
3 MCT:1000066 leaf discoloration percentage (+)
4 TO:0000227 root length (+)
5 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Zhou Jing; Li Fei; Wang Jin-Lan; Ma Yun; Chong Kang; Xu Yun-yuan; Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis. Journal of Plant Physiology 2009:166
PMID [19324458]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India