Rice gene details
Searching for LOC_Os11g32110 [auxin response factor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g32110.1 854 148 253 PF02362.13 B3
2 LOC_Os11g32110.1 854 275 357 PF06507.5 Auxin_resp
3 LOC_Os11g32110.1 854 639 817 PF02309.8 AUX_IAA
4 LOC_Os11g32110.2 853 147 252 PF02362.13 B3
5 LOC_Os11g32110.2 853 274 356 PF06507.5 Auxin_resp
6 LOC_Os11g32110.2 853 638 816 PF02309.8 AUX_IAA
7 LOC_Os11g32110.3 853 147 252 PF02362.13 B3
8 LOC_Os11g32110.3 853 274 356 PF06507.5 Auxin_resp
9 LOC_Os11g32110.3 853 638 816 PF02309.8 AUX_IAA
10 LOC_Os11g32110.4 837 131 236 PF02362.13 B3
11 LOC_Os11g32110.4 837 258 340 PF06507.5 Auxin_resp
12 LOC_Os11g32110.4 837 622 800 PF02309.8 AUX_IAA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
2 GO:0005515 protein binding (RGAP)
3 GO:0003677 DNA binding (RGAP)
4 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0000003 reproduction (RGAP)
4 GO:0007275 multicellular organismal development (RGAP)
5 GO:0009838 abscission (RGAP)
6 GO:0009908 flower development (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000063 epibrassinolide (+)
2 MCE:1000347 alginate oligosaccharide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN61 spikelet weight
2 AQFP007 culm thickness
3 AQEB009 1000-seed weight
4 AQEB014 1000-seed weight
5 CQAE12 panicle number
6 CQAE18 grain number
7 CQAE22 1000-grain weight
8 CQAE25 grain yield per plant
9 AQCU050 spikelet fertility
10 AQCU051 spikelet fertility
11 AQCU081 leaf width
12 AQCU091 spikelet number
13 AQCU099 spikelet number
14 AQCU195 plant height
15 AQCU247 spikelet number
16 AQCU251 spikelet number
17 AQCU261 spikelet fertility
18 AQAP050 brown planthopper resistance
19 AQCU077 leaf width
20 AQCU193 plant height
21 AQAP030 brown planthopper resistance
22 AQAQ017 blast disease resistance
23 AQCU056 days to heading
24 AQFT023 root pulling force
25 AQF024 seed dormancy
26 AQF042 seed dormancy
27 CQAH46 seed dormancy
28 CQAH47 seed dormancy
29 CQAH48 seed dormancy
30 CQH36 root pulling force
31 CQE79 carbon content
32 CQE80 space
33 CQAD6 allelopathic effect
34 CQN24 glutamine synthetase content
35 AQF018 seed dormancy
36 AQF035 seed dormancy
37 AQF053 awn length
38 AQF074 anther length
39 AQS004 sheath blight disease resistance
40 AQAO001 blast disease resistance
41 CQAW30 tiller number
42 CQAW31 root penetration index
43 AQEN009 blast disease resistance
44 AQEN016 blast disease resistance
45 AQEN019 blast disease resistance
46 AQEN049 blast disease resistance
47 AQEN057 blast disease resistance
48 AQHQ012 days to flower
49 AQHQ021 days to flower
50 CQAX10 plant height
51 AQAB064 large vascular bundle number
52 AQAI025 large vascular bundle number
53 CQAR42 spikelet number
54 CQAR43 spikelet density
55 AQO010 biomass yield
56 AQO047 root thickness
57 AQO091 root number
58 DQC11 penetrated root number
59 DQC18 penetrated to total root ratio
60 CQN48 panicle weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000019 seedling height (+)
2 TO:0000227 root length (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os01g08320 --- LOC_Os11g32110 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os11g32110 - --- LOC_Os07g03250 - -1299 to -1220 TrSS Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]


2  Kitomi Yuka; Ito Hiroko; Hobo Tokunori; Aya Koichiro; Kitano Hidemi; Inukai Yoshiaki; The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. The Plant Journal 2011:67
PMID [21481033]


3  Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India