Rice gene details
Searching for LOC_Os11g36440 [amine oxidase, flavin-containing, domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g36440.1 587 70 99 PF00890.16 FAD_binding_2
2 LOC_Os11g36440.1 587 320 347 PF01134.14 GIDA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009416 response to light stimulus  
5 GO:0009733 response to auxin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0008152 metabolic process (RGAP)
8 GO:0016043 cellular component organization (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007196 light regimen (+)
5 EO:0007224 light intensity regimen (+)
6 EO:0007270 continuous dark (no light) regimen (+)
7 EO:0007383 watering regimen (+)
8 EO:0007404 drought environment (+)
9 MCE:1000008 methyl viologen (MV) (+)
10 MCE:1000069 dessication/dehydration stress (+)
11 MCE:1000287 recovery treatment from cold stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN61 spikelet weight
2 AQFP007 culm thickness
3 CQAE12 panicle number
4 CQAE18 grain number
5 CQAE22 1000-grain weight
6 CQAE25 grain yield per plant
7 AQCU050 spikelet fertility
8 AQCU051 spikelet fertility
9 AQCU081 leaf width
10 AQCU091 spikelet number
11 AQCU099 spikelet number
12 AQCU195 plant height
13 AQCU247 spikelet number
14 AQCU251 spikelet number
15 AQCU261 spikelet fertility
16 AQAP050 brown planthopper resistance
17 AQCU077 leaf width
18 AQCU193 plant height
19 AQAP030 brown planthopper resistance
20 AQAQ017 blast disease resistance
21 AQCU056 days to heading
22 CQAD6 allelopathic effect
23 CQN24 glutamine synthetase content
24 AQF018 seed dormancy
25 AQF035 seed dormancy
26 AQF053 awn length
27 AQF074 anther length
28 AQS004 sheath blight disease resistance
29 AQAO001 blast disease resistance
30 CQAX10 plant height
31 CQN48 panicle weight
32 CQAS137 spikelet density
33 AQR016 deep root dry weight
34 AQR024 deep root to shoot ratio
35 AQR031 deep root dry weight
36 AQR050 root thickness
37 CQAH50 seed dormancy
38 AQBE070 tiller number
39 CQAW29 root number
40 AQCF046 1000-seed weight
41 AQBU002 green leafhopper resistance
42 CQE81 tiller number
43 AQHE022 root length
44 AQHE080 root weight
45 AQHE086 root weight
46 AQCB010 spikelet number
47 AQGI035 root dry weight
48 AQGI065 root dry weight
49 AQGI068 root dry weight
50 AQGI137 biomass yield
51 AQGI159 biomass yield
52 AQGI182 biomass yield
53 AQGI221 total biomass yield
54 AQGI251 total biomass yield
55 AQX007 primary branch
56 AQX008 primary branch

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0004506 developing seed stage (+)
5 PO:0007050 FR.03 late stage of fruit ripening (+)
6 PO:0007065 LP.05 five leaves visible (+)
7 PO:0007073 2 formation of axillary shoot (+)
8 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000100 upper leaf (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009049 inflorescence (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000015 photochemical efficiency (+)
2 MCT:1000034 superoxide dismutase (SOD) activity (+)
3 MCT:1000037 malondialdehyde (MDA) content (+)
4 MCT:1000039 water loss (+)
5 MCT:1000208 leaf whitening (+)
6 MCT:1000218 hydrogen peroxide accumulation (+)
7 MCT:1000311 properly stacked thylakoid membranes (+)
8 MCT:1000433 percentage of open stomata (+)
9 MCT:1000434 trans-violaxanthin content (+)
10 MCT:1000435 cis-violaxanthin content (+)
11 MCT:1000436 trans-beta-carotene content (+)
12 MCT:1000437 cis beta-carotene content (+)
13 MCT:1000510 leaf fresh weight (+)
14 MCT:1000565 development of alternating green and yellow crossbands on the leaf blade (+)
15 MCT:1000566 development of pale green leaves (+)
16 MCT:1000567 seedling whitening (+)
17 MCT:1000568 reactive oxygen species accumulation (+)
18 MCT:1000570 membrane permeability (+)
19 TO:0000085 leaf rolling (+)
20 TO:0000207 plant height (+)
21 TO:0000272 plant survivability (+)
22 TO:0000478 abscisic acid concentration (+)
23 TO:0000495 chlorophyll content (+)
24 TO:0000619 vivipary (+)
25 TO:0001016 relative chlorophyll content (+)
26 TO:0002667 abscisic acid content (+)
27 TO:0002696 alpha carotene content (+)
28 TO:0002701 lutein content (+)
29 TO:0002715 chloroplast development trait (+)
30 TO:0020106 Indole-3-acetic acid content (+)
31 TO:0020117 non photochemical quenching (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Chaudhary Neetu; Nijhawan Aashima; Khurana Jitendra P; Khurana Paramjit; Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Molecular Genetics and Genomics 2010:283
PMID [19890663]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Fang Jun; Chai Chenglin; Qian Qian; Li Chunlai; Tang Jiuyou; Sun Lei; Huang Zejun; Guo Xiaoli; Sun Changhui; Liu Min; Zhang Yan; Lu Qingtao; Wang Yiqin; Lu Congming; Han Bin; Chen Fan; Cheng Zhukuan; Chu Chengcai; Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. The Plant journal : for cell and molecular biology 2008:54
PMID [18208525]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India