Rice gene details
Searching for LOC_Os11g37970 [WIP5 - Wound-induced protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os11g37970.1 147 27 146 PF00967.9 Barwin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  6
N22InfloresenceFC
  167
N22 Root FC
  10
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -2
IR64 Root FC
  4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0030246 carbohydrate binding (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009411 response to UV  
3 GO:0009414 response to water deprivation  
4 GO:0009611 response to wounding  
5 GO:0009620 response to fungus  
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0009719 response to endogenous stimulus (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007222 UV light regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 EO:0007373 mechanical damage (+)
11 EO:0007404 drought environment (+)
12 EO:0007409 brassinosteroid (+)
13 EO:0007415 hydrogen peroxide (+)
14 MCE:1000013 ethephon (+)
15 MCE:1000075 recovery treatment (+)
16 MCE:1000117 severe drought (+)
17 MCE:1000178 phytokinin (+)
18 MCE:1000278 Magnaporthe grisea isolate 91-17-2 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN61 spikelet weight
2 AQFP007 culm thickness
3 CQAE12 panicle number
4 CQAE18 grain number
5 CQAE22 1000-grain weight
6 CQAE25 grain yield per plant
7 AQCU050 spikelet fertility
8 AQCU051 spikelet fertility
9 AQCU081 leaf width
10 AQCU091 spikelet number
11 AQCU099 spikelet number
12 AQCU195 plant height
13 AQCU247 spikelet number
14 AQCU251 spikelet number
15 AQCU261 spikelet fertility
16 AQAP050 brown planthopper resistance
17 AQCU077 leaf width
18 AQCU193 plant height
19 AQAP030 brown planthopper resistance
20 AQAQ017 blast disease resistance
21 AQCU056 days to heading
22 CQAD6 allelopathic effect
23 CQN24 glutamine synthetase content
24 AQF018 seed dormancy
25 AQF035 seed dormancy
26 AQF053 awn length
27 AQF074 anther length
28 AQAO001 blast disease resistance
29 CQAX10 plant height
30 CQN48 panicle weight
31 CQAS137 spikelet density
32 CQAH50 seed dormancy
33 AQBE070 tiller number
34 CQAW29 root number
35 AQCF046 1000-seed weight
36 AQBU002 green leafhopper resistance
37 CQE81 tiller number
38 AQHE022 root length
39 AQHE080 root weight
40 AQHE086 root weight
41 AQCB010 spikelet number
42 AQGI035 root dry weight
43 AQGI065 root dry weight
44 AQGI068 root dry weight
45 AQGI137 biomass yield
46 AQGI159 biomass yield
47 AQGI182 biomass yield
48 AQGI221 total biomass yield
49 AQGI251 total biomass yield
50 AQX007 primary branch
51 AQX008 primary branch
52 AQR041 rooting depth

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001083 inflorescence development stages (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
4 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0006000 Poaceae hull (+)
3 PO:0008037 seedling (+)
4 PO:0009000 pulvinus (+)
5 PO:0009001 fruit (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009010 seed (+)
9 PO:0009047 stem (+)
10 PO:0009062 gynoecium (+)
11 PO:0009066 anther (-)
12 PO:0020103 flag leaf (+)
13 PO:0020104 leaf sheath (+)
14 PO:0020141 stem node (+)
15 PO:0025034 leaf (+)
16 PO:0025240 second order inflorescence (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 TO:0000153 relative yield (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Nili; Xiao Benze; Xiong Lizhong; Identification of a cluster of PR4-like genes involved in stress responses in rice. Journal of Plant Physiology 2011:
PMID [21955397]


Koo Sung Cheol; Choi Man Soo; Chun Hyun Jin; Shin Dong Bum; Park Bong Soo; Kim Yul Ho; Park Hyang-Mi; Seo Hak Soo; Song Jong Tae; Kang Kyu Young; Yun Dae-Jin; Chung Woo Sik; Cho Moo Je; Kim Min Chul; The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice. Molecules and cells 2009:27
PMID [19466605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India