Rice gene details
Searching for LOC_Os11g43950 [dnaJ domain containing protein, expressed ]
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os11g43950.1 889 19 36 seg
2 LOC_Os11g43950.1 889 56 69 seg
3 LOC_Os11g43950.1 889 80 89 seg
4 LOC_Os11g43950.1 889 108 118 seg
5 LOC_Os11g43950.1 889 258 269 seg
6 LOC_Os11g43950.1 889 415 430 seg
7 LOC_Os11g43950.1 889 497 553 coiled-coil
8 LOC_Os11g43950.1 889 505 540 seg
9 LOC_Os11g43950.1 889 543 663 seg
10 LOC_Os11g43950.1 889 597 648 coiled-coil
11 LOC_Os11g43950.1 889 717 888 AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
12 LOC_Os11g43950.1 889 742 764 seg
13 LOC_Os11g43950.1 889 755 788 coiled-coil
14 LOC_Os11g43950.1 889 788 885 IPR001623 no description
15 LOC_Os11g43950.1 889 791 886 IPR001623 Chaperone J-domain
16 LOC_Os11g43950.1 889 823 889 IPR001623 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAP030 brown planthopper resistance
2 AQAQ017 blast disease resistance
3 AQCU056 days to heading
4 AQF018 seed dormancy
5 AQF035 seed dormancy
6 AQF053 awn length
7 AQF074 anther length
8 CQN48 panicle weight
9 CQAS137 spikelet density
10 AQCF046 1000-seed weight
11 AQX007 primary branch
12 AQX008 primary branch
13 CQY5 germination speed
14 AQF105 KClO3 resistance
15 AQF116 apiculus hair length
16 AQF143 mesocotyl length
17 CQAH52 seed dormancy
18 CQAH53 seed dormancy
19 AQDZ004 lodging incidence
20 AQAR001 root dry weight
21 AQAR002 root length
22 AQHR025 tiller number
23 CQN40 leaf senescence
24 CQN60 spikelet weight
25 AQR007 biomass yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India