Rice gene details
Searching for LOC_Os12g04220 [calcium-transporting ATPase, plasma membrane-type, putative ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g04220.1 1040 115 191 PF00690.18 Cation_ATPase_N
2 LOC_Os12g04220.1 1040 205 446 PF00122.12 E1-E2_ATPase
3 LOC_Os12g04220.1 1040 450 779 PF00702.18 Hydrolase
4 LOC_Os12g04220.1 1040 840 1015 PF00689.13 Cation_ATPase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  4
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008219 cell death (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009056 catabolic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005773 vacuole (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS146 days to maturity
2 CQAS156 yield
3 AQBK021 days to heading
4 AQBK029 plant height
5 AQBK047 seed set percent
6 AQBK002 days to heading
7 CQC7 days to heading
8 AQBS007 days to heading
9 AQBS015 days to maturity
10 CQAS148 panicle number
11 CQAS151 seed number
12 AQBP008 grain core percent white
13 AQGL006 sheath blight disease resistance
14 AQGL012 sheath blight disease resistance
15 AQGL018 sheath blight disease resistance
16 AQCV009 grain length
17 CQE82 rubisco to chlorophyll ratio
18 AQCI004 phosphorus sensitivity
19 AQCI007 phosphorus sensitivity
20 AQCI010 phosphorus sensitivity
21 AQCI013 phosphorus sensitivity
22 CQF14 rubisco to nitrogen content ratio
23 AQDQ064 spikelet number
24 CQAQ6 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India