Rice gene details
Searching for LOC_Os12g05110 [pyruvate kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g05110.1 528 30 379 PF00224.13 PK
2 LOC_Os12g05110.1 528 394 524 PF02887.8 PK_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -5
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
6 GO:0009056 catabolic process (RGAP)
7 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FERMENTATION-PWY mixed acid fermentation
2 GLYCOLYSIS glycolysis I
3 PWY-1042 glycolysis IV (plant cytosol)
4 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS146 days to maturity
2 CQAS156 yield
3 AQBK021 days to heading
4 AQBK029 plant height
5 AQBK047 seed set percent
6 AQBK002 days to heading
7 CQC7 days to heading
8 AQBS007 days to heading
9 AQBS015 days to maturity
10 CQAS148 panicle number
11 CQAS151 seed number
12 AQBP008 grain core percent white
13 AQGL006 sheath blight disease resistance
14 AQGL012 sheath blight disease resistance
15 AQGL018 sheath blight disease resistance
16 AQCV009 grain length
17 CQE82 rubisco to chlorophyll ratio
18 AQCI004 phosphorus sensitivity
19 AQCI007 phosphorus sensitivity
20 AQCI010 phosphorus sensitivity
21 AQCI013 phosphorus sensitivity
22 CQF14 rubisco to nitrogen content ratio
23 AQDQ064 spikelet number
24 CQAQ6 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 MCP:1000097 third shoot internode (+)
3 MCP:1000237 second shoot internode (+)
4 MCP:1000316 third leaf from base (+)
5 PO:0000037 shoot apex (+)
6 PO:0008037 seedling (+)
7 PO:0009005 root (+)
8 PO:0009049 inflorescence (+)
9 PO:0020033 coleoptile (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020103 flag leaf (+)
12 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Zhang Yan; Xiao Wenkai; Luo Lijuan; Pang Jinhuan; Rong Wei; He Chaozu; Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice. Planta 2012:235
PMID [21805151]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India