Rice gene details
Searching for LOC_Os12g06570 [cyclic nucleotide-gated ion channel, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g06570.1 630 12 284 PF00520.23 Ion_trans
2 LOC_Os12g06570.1 630 390 485 PF00027.21 cNMP_binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
 
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  -2
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009617 response to bacterium  
2 GO:0009723 response to ethylene stimulus  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0006810 transport (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0009856 pollination (RGAP)
8 GO:0016043 cellular component organization (RGAP)
9 GO:0009653 anatomical structure morphogenesis (RGAP)
10 GO:0030154 cell differentiation (RGAP)
11 GO:0016049 cell growth (RGAP)
12 GO:0007275 multicellular organismal development (RGAP)
13 GO:0019725 cellular homeostasis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS146 days to maturity
2 CQAS156 yield
3 AQBK029 plant height
4 AQBK047 seed set percent
5 AQBK002 days to heading
6 CQC7 days to heading
7 AQGL006 sheath blight disease resistance
8 AQGL012 sheath blight disease resistance
9 AQGL018 sheath blight disease resistance
10 AQCV009 grain length
11 CQE82 rubisco to chlorophyll ratio
12 AQCI004 phosphorus sensitivity
13 AQCI007 phosphorus sensitivity
14 AQCI010 phosphorus sensitivity
15 AQCI013 phosphorus sensitivity
16 CQF14 rubisco to nitrogen content ratio
17 AQDQ064 spikelet number
18 CQAQ6 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India