Rice gene details
Searching for LOC_Os12g07650 [OsGrx_S16 - glutaredoxin subgroup II, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g07650.1 286 197 264 PF00462.16 Glutaredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0010106 cellular response to iron ion starvation  
6 GO:0010288 response to lead ion  
7 GO:0006810 transport (RGAP)
8 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000138 lead nitrate regimen (+)
3 MCE:1000143 iron deficiency treatment (+)
4 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS146 days to maturity
2 CQAS156 yield
3 AQBK029 plant height
4 AQBK047 seed set percent
5 AQBK002 days to heading
6 CQC7 days to heading
7 AQGL006 sheath blight disease resistance
8 AQGL012 sheath blight disease resistance
9 AQGL018 sheath blight disease resistance
10 AQCV009 grain length
11 CQE82 rubisco to chlorophyll ratio
12 AQCI004 phosphorus sensitivity
13 AQCI007 phosphorus sensitivity
14 AQCI010 phosphorus sensitivity
15 AQCI013 phosphorus sensitivity
16 CQF14 rubisco to nitrogen content ratio
17 AQDQ064 spikelet number
18 CQAQ6 tiller number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India