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Searching for LOC_Os12g18360
[NB-ARC domain containing protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os12g18360.1 |
1034 |
211 |
504 |
PF00931.14 |
NB-ARC |
2 |
LOC_Os12g18360.1 |
1034 |
918 |
1025 |
PF00085.12 |
Thioredoxin |
3 |
LOC_Os12g18360.2 |
929 |
211 |
504 |
PF00931.14 |
NB-ARC |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007069 |
gibberellic acid regimen |
(-) |
2 |
EO:0007196 |
light regimen |
(-) |
3 |
EO:0007204 |
1-naphthaleneacetic acid |
(-) |
4 |
EO:0007290 |
kinetin regimen |
(-) |
5 |
MCE:1000203 |
dark regimen |
(-) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
AQBK002 |
days to heading |
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2 |
CQC7 |
days to heading |
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3 |
AQCV009 |
grain length |
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4 |
CQE82 |
rubisco to chlorophyll ratio |
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5 |
AQCI004 |
phosphorus sensitivity |
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6 |
AQCI007 |
phosphorus sensitivity |
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7 |
AQCI010 |
phosphorus sensitivity |
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8 |
AQCI013 |
phosphorus sensitivity |
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9 |
CQF14 |
rubisco to nitrogen content ratio |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(-) |
2 |
MCP:1000110 |
1 day pre-heading stage |
(-) |
3 |
MCP:1000136 |
5 days pre-heading stage |
(-) |
4 |
MCP:1000194 |
inflorescence 4-5cm stage |
(-) |
5 |
MCP:1000201 |
14 days post-heading stage |
(-) |
6 |
MCP:1000250 |
inflorescenece secondary branch primordium differentiation stage |
(-) |
7 |
MCP:1000489 |
3 days post-anthesis stage |
(-) |
8 |
MCP:1000518 |
seedling development stage |
(-) |
9 |
PO:0007015 |
radicle emergence |
(-) |
10 |
PO:0007022 |
imbibition |
(-) |
11 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(-) |
12 |
PO:0007071 |
2.02 main shoot and axillary shoots visible at two nodes |
(-) |
13 |
PO:0007106 |
LP.03 three leaves visible |
(-) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]
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