Rice gene details
Searching for LOC_Os12g19304 [Fe-S metabolism associated domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g19304.1 414 17 290 PF02445.8 NadA
2 LOC_Os12g19304.2 712 73 199 PF02657.7 SufE
3 LOC_Os12g19304.2 712 249 588 PF02445.8 NadA
4 LOC_Os12g19304.4 377 2 253 PF02445.8 NadA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0005488 binding (RGAP)
4 GO:0030234 enzyme regulator activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009412 response to heavy metal  
2 GO:0046686 response to cadmium ion  
3 GO:0008152 metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-3701 biotin biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK002 days to heading
2 CQC7 days to heading
3 AQCV009 grain length
4 CQE82 rubisco to chlorophyll ratio
5 AQCI004 phosphorus sensitivity
6 AQCI007 phosphorus sensitivity
7 AQCI010 phosphorus sensitivity
8 AQCI013 phosphorus sensitivity
9 CQF14 rubisco to nitrogen content ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India