Rice gene details
Searching for LOC_Os12g19381 [ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g19381.1 176 58 166 PF00101.12 RuBisCO_small
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005576 extracellular region (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0009579 thylakoid (RGAP)
5 GO:0005840 ribosome (RGAP)
6 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-735 jasmonic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK002 days to heading
2 CQC7 days to heading
3 AQCV009 grain length
4 CQE82 rubisco to chlorophyll ratio
5 AQCI004 phosphorus sensitivity
6 AQCI007 phosphorus sensitivity
7 AQCI010 phosphorus sensitivity
8 AQCI013 phosphorus sensitivity
9 CQF14 rubisco to nitrogen content ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India