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Searching for LOC_Os12g24800
[9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os12g24800.1 |
577 |
68 |
569 |
PF03055.7 |
RPE65 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005515 |
protein binding |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009749 |
response to glucose stimulus |
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2 |
GO:0010212 |
response to ionizing radiation |
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3 |
GO:0010555 |
response to mannitol stimulus |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0009536 |
plastid |
(RGAP) |
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Environment details
Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
AQBK002 |
days to heading |
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2 |
CQC7 |
days to heading |
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3 |
AQCI004 |
phosphorus sensitivity |
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4 |
AQCI007 |
phosphorus sensitivity |
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5 |
AQCI010 |
phosphorus sensitivity |
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6 |
AQCI013 |
phosphorus sensitivity |
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7 |
CQF14 |
rubisco to nitrogen content ratio |
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Plant developmental stage / tissue details
Plant development stage
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009010 |
seed |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]
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2 |
Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]
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3 |
Song Shiyong; Dai Xiaoyan; Zhang Wen-Hao; A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. Journal of experimental botany 2012:63
PMID [22859682]
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4 |
Zhu Guohui; Ye Nenghui; Zhang Jianhua; Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis. Plant & cell physiology 2009:50
PMID [19208695]
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