Rice gene details
Searching for LOC_Os12g24800 [9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g24800.1 577 68 569 PF03055.7 RPE65
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  -1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
 
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009749 response to glucose stimulus  
2 GO:0010212 response to ionizing radiation  
3 GO:0010555 response to mannitol stimulus  
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 MCE:1000044 mannitol (+)
3 MCE:1000241 D-glucose (+)
4 MCE:1000310 nitrogen ion irradiation (+)
5 MCE:1000326 vacuum treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK002 days to heading
2 CQC7 days to heading
3 AQCI004 phosphorus sensitivity
4 AQCI007 phosphorus sensitivity
5 AQCI010 phosphorus sensitivity
6 AQCI013 phosphorus sensitivity
7 CQF14 rubisco to nitrogen content ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0007022 imbibition (+)
10 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]


Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schl├Ąppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Song Shiyong; Dai Xiaoyan; Zhang Wen-Hao; A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. Journal of experimental botany 2012:63
PMID [22859682]


Zhu Guohui; Ye Nenghui; Zhang Jianhua; Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis. Plant & cell physiology 2009:50
PMID [19208695]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India