Rice gene details
Searching for LOC_Os12g36830 [pathogenesis-related Bet v I family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g36830.1 161 1 155 PF00407.11 Bet_v_I
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  5
N22InfloresenceFC
  14
N22 Root FC
  -2
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -7
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009611 response to wounding  
3 GO:0009651 response to salt stress  
4 GO:0009751 response to salicylic acid stimulus  
5 GO:0009753 response to jasmonic acid stimulus  
6 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007187 salicylic acid regimen (+)
4 EO:0007373 mechanical damage (+)
5 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
6 MCE:1000069 dessication/dehydration stress (+)
7 MCE:1000302 Xanthomonas oryzae pv. oryzicola strain RS105 (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000258 root cortex (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (-)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Guo Lijia; Guo Chiming; Li Min; Wang Wujing; Luo Chengke; Zhang Yuxia; Chen Liang; Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice. Molecular biology reports 2014:
PMID [24420860]


Takeuchi Kaoru; Gyohda Atsuko; Tominaga Makiko; Kawakatsu Madoka; Hatakeyama Atsushi; Ishii Noriko; Shimaya Kentaroh; Nishimura Takeshi; Riemann Michael; Nick Peter; Hashimoto Makoto; Komano Teruya; Endo Akira; Okamoto Takashi; Jikumaru Yusuke; Kamiya Yuji; Terakawa Teruhiko; Koshiba Tomokazu; RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots. Plant & Cell Physiology 2011:52
PMID [21828106]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India