Rice gene details
Searching for LOC_Os12g36880 [pathogenesis-related Bet v I family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g36880.1 159 1 153 PF00407.11 Bet_v_I
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  5
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -3
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009607 response to biotic stimulus  
3 GO:0009620 response to fungus  
4 GO:0009739 response to gibberellin stimulus  
5 GO:0060992 response to fungicide  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007198 water environment (+)
7 EO:0007226 Magnaporthe grisea (+)
8 EO:0007332 cold air temperature regimen (+)
9 MCE:1000044 mannitol (+)
10 MCE:1000069 dessication/dehydration stress (+)
11 MCE:1000100 probenazole (+)
12 MCE:1000268 Magnaporthe grisea race 102S (+)
13 MCE:1000269 Magnaporthe grisea race 003 (+)
14 MCE:1000275 Magnaporthe grisea strain P140 (+)
15 MCE:1000302 Xanthomonas oryzae pv. oryzicola strain RS105 (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000005 cultured plant cell (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009025 vascular leaf (+)
7 PO:0020039 leaf lamina (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Guo Lijia; Guo Chiming; Li Min; Wang Wujing; Luo Chengke; Zhang Yuxia; Chen Liang; Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice. Molecular biology reports 2014:
PMID [24420860]


Liu Dongfeng; Chen Xujun; Liu Jiqin; Ye Jianchun; Guo Zejian; The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany 2012:63
PMID [22442415]


Prasad Bishun Deo; Creissen Gary; Lamb Chris; Chattoo Bharat B; Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis. Molecular Plant-Microbe Interactions 2009:22
PMID [19888828]


Koo Sung Cheol; Choi Man Soo; Chun Hyun Jin; Shin Dong Bum; Park Bong Soo; Kim Yul Ho; Park Hyang-Mi; Seo Hak Soo; Song Jong Tae; Kang Kyu Young; Yun Dae-Jin; Chung Woo Sik; Cho Moo Je; Kim Min Chul; The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice. Molecules and cells 2009:27
PMID [19466605]


Zhang Juan; Peng Youliang; Guo Zejian; Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants. Cell Research 2008:18
PMID [18071364]


Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]


Asano Takayuki; Tanaka Naoki; Yang Guangxiao; Hayashi Nagao; Komatsu Setsuko; Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice. Plant & Cell Physiology 2005:46
PMID [15695435]


Hashimoto Makoto; Kisseleva Larisa; Sawa Shinichiro; Furukawa Toshiko; Komatsu Setsuko; Koshiba Tomokazu; A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway. Plant & Cell Physiology 2004:45
PMID [15169937]


Xiong Lizhong; Yang Yinong; Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. The Plant Cell 2003:15
PMID [12615946]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India